View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4963_low_7 (Length: 375)
Name: NF4963_low_7
Description: NF4963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4963_low_7 |
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| [»] scaffold0006 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 14 - 360
Target Start/End: Complemental strand, 13680516 - 13680167
Alignment:
| Q |
14 |
catcatggtgggaa--ttggcaacatgattatctcgagcagaagaacagtgtgtttgattcctagagtcgcccatttgagaggtagcaaaaccctctaac |
111 |
Q |
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||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13680516 |
catcatggtgggagagttggaaagatgattatctcgagcagaagaacagtgtgtttgattcctagagtcgcccatttgagaggtagccaaaccctctaac |
13680417 |
T |
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| Q |
112 |
nnnnnnnnnctagatgaattgttcccgactcgaaaattagtctcatagcagacccaaagtgccaaagcc-acggtgataccttgggatgtctattgtggt |
210 |
Q |
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| T |
13680416 |
aaaaaaaaactagatgaattgctcccgattcgaaaattagtctcatagcagacccaaagtgccaaagcccacagtgataccttgggatatctattgtggt |
13680317 |
T |
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| Q |
211 |
caaagatactaattacggtaggtaaaatacgaaaaaatcactggttagaactcaggtttggacatgaagcgacattaactgttagtgtaagttttcgccc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13680316 |
caaagatactaattacggtaggtaaaatacgaaaaaatctctggttaaaactcgggtttggacatgaagcgacattaactgttagtgtaagttttcgcca |
13680217 |
T |
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| Q |
311 |
aatggtgttaaaacttttagaaagaatttgctaacaatttgggttggaat |
360 |
Q |
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| T |
13680216 |
aatggtgttaaaacttttagaaagaatttgctaacaatttgggttggaat |
13680167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 31 - 360
Target Start/End: Complemental strand, 13417935 - 13417604
Alignment:
| Q |
31 |
gcaacatgattatctcgagcagaagaacagtgtgtttgattcctagagtcgcccatttgagaggtagcaaaaccctctaacnnnnnnnnn--ctagatga |
128 |
Q |
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| T |
13417935 |
gcaacatgattatctcgagcagaagaacagtgtgtttgattcctagaatcgcccatttgagaggtagccaaaccctctaacaaagaaaaaaactagatga |
13417836 |
T |
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| Q |
129 |
attgttcccgactcgaaaattagtctcatagcagacccaaagtgccaaagccacggtgataccttgggatgtctattgtggtcaaagatactaattacgg |
228 |
Q |
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| T |
13417835 |
attgttcccgactcgaaaattagtctcatagcatacccaaagtgccaaagccacggtgataccttgggatatctattgtggtcaaagatactaattacgg |
13417736 |
T |
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| Q |
229 |
taggtaaaatacgaaaaaatcactggttagaactcaggtttggacatgaagcgacattaactgttagtgtaagttttcgcccaatggtgttaaaactttt |
328 |
Q |
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| T |
13417735 |
taggtaaaataagaaaaaatctcgggttagaactcgggtttggacgtgaagcgacattaactgttagtgtaagttttcgccaaatggtgttaaaactttt |
13417636 |
T |
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| Q |
329 |
agaaagaatttgctaacaatttgggttggaat |
360 |
Q |
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| T |
13417635 |
agaaagaatttcctaacaatttgggttggaat |
13417604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 13666369 - 13666290
Alignment:
| Q |
28 |
ttggcaacatgattatctcgagcagaagaacagtgtgtttgattcctagagtcgcccatttgagaggtagcaaaaccctcta |
109 |
Q |
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||||||||||| |||||||||||| |||||| | ||||||||| ||| |||| || |||||||||||||| |||||||||| |
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| T |
13666369 |
ttggcaacatgtttatctcgagcaaaagaac--tatgtttgatttctaaagtcacctatttgagaggtagccaaaccctcta |
13666290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 48278 - 48134
Alignment:
| Q |
25 |
gaattggcaacatgattatctcgagcagaagaacagtgtgtttgattcctagagtcgcccatttgagaggtagcaaaaccctctaacnnnnnnnnnctag |
124 |
Q |
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|||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
48278 |
gaatcggcaacatgactatctcgagcagaagaactgtgtgtttgattcctagagtcgcccatttgagaggtagccaaaccctctaac-aaaaaaaactag |
48180 |
T |
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| Q |
125 |
atgaattgttcccgactcgaaaattagtctcatagcagacccaaag |
170 |
Q |
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| T |
48179 |
atgaattgttgccaactcaaaaattagtttcatagcagacccaaag |
48134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 194 - 351
Target Start/End: Complemental strand, 48134 - 47978
Alignment:
| Q |
194 |
gggatgtctattgtggtcaaagatactaattacggtaggtaaaatacgaaaaaatcactggttagaactcaggtttggacatgaagcgacattaactgtt |
293 |
Q |
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||||| ||||||| |||||||||||||||||||||||||| | ||| | |||| || | |||| |||||| |||||||||||| |||| ||||||||||| |
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| T |
48134 |
gggatatctattg-ggtcaaagatactaattacggtaggttacataaggaaaagtctcaggttcgaactcgggtttggacatgcagcggcattaactgtt |
48036 |
T |
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| Q |
294 |
agtgtaagttttcgcccaatggtgttaaaacttttagaaagaatttgctaacaatttg |
351 |
Q |
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| T |
48035 |
agaatgagttttcgctaaatggggttaaaacttttagagagattttactaacaatttg |
47978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 163984 - 163905
Alignment:
| Q |
28 |
ttggcaacatgattatctcgagcagaagaacagtgtgtttgattcctagagtcgcccatttgagaggtagcaaaaccctcta |
109 |
Q |
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||||||||||| |||||||||||| |||||| | ||||||||| ||| |||| || |||||||||||||| |||||||||| |
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| T |
163984 |
ttggcaacatgtttatctcgagcaaaagaac--tatgtttgatttctaaagtcacctatttgagaggtagccaaaccctcta |
163905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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