View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4963_low_9 (Length: 358)
Name: NF4963_low_9
Description: NF4963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4963_low_9 |
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| [»] scaffold0186 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 342
Target Start/End: Original strand, 33199723 - 33200052
Alignment:
| Q |
13 |
aaaatacaaatattaaactaaaaattgaatatttataattttagaatatcaaaactcaaaattataactttattaattctatttctacttcaagnnnnnn |
112 |
Q |
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| T |
33199723 |
aaaatacaaatattaaactaaaaattgaatatttataattttagaatatcaaaactcaaaattataactttattaattctatttctacttaaagaaaaaa |
33199822 |
T |
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| Q |
113 |
ngaggtaccacttaaaaaggattggtacatgcttgtaccacaacaagctcacagcagagtataccatcactcccacaccccaaacaatggcacccagcat |
212 |
Q |
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| T |
33199823 |
-gaggtaccacttaaaaaggattggtacatgcttgtaccacaacaagctcacagcagagtataccatcactcccacatcccaaacaatggcacccagcat |
33199921 |
T |
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| Q |
213 |
cttaccattgctagtaaaatatgaaaggcaacaaactataccacatatgtgtgagctgaattatatatgcttttatgcaacccgtggtagttg-agctca |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33199922 |
cttaccattgctagtaaaatatgaaaggcaacaaactataccacatatgtgtgagctgaattatatatgcttttatgcaacccgtggtagttgaagctca |
33200021 |
T |
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| Q |
312 |
ctaatgttatggatccatgttggcatcagtg |
342 |
Q |
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| T |
33200022 |
ctaatgttatggatccatgttggcatcagtg |
33200052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 4143 - 4077
Alignment:
| Q |
13 |
aaaatacaaatattaaactaaaaattgaatatttataattttagaatatcaaaactcaaaattataac |
80 |
Q |
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| T |
4143 |
aaaatataaatatcaaactaaaaact-aatttttataattttataatattaaaactcaaagttataac |
4077 |
T |
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