View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4964_high_1_N (Length: 583)
Name: NF4964_high_1_N
Description: NF4964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4964_high_1_N |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Complemental strand, 42029028 - 42028479
Alignment:
| Q |
1 |
acaagttcattaaataatcttggcatatatcgaattaagcaccttgacctatactactatatatttagaacaaatcacaaatgaattattgatgacacta |
100 |
Q |
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| T |
42029028 |
acaagttcattaaataatcttggcatatatcgaattaagcaccttgacctatactactatatatttagaacaaatcacaaatgaattaatgatgacacta |
42028929 |
T |
|
| Q |
101 |
ttgnnnnnnnnnnnnnn-gggatgagggaatcccagaagctagtttacaagagcgtagagatgatgaagtggtttct-gatcggatctcccttcaaatca |
198 |
Q |
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| T |
42028928 |
ttgttttttttcttttttgggataagggaatcccagaagctaggttacaagagcatagagatgatgaagtggtttcttgatcggatctcccttcaaatca |
42028829 |
T |
|
| Q |
199 |
atatatggatcatgaaaacagttgacaagcatcaatttcaccaaaatttaaaatgtgaaaagattctaattttctaagtttgtggagtaagctattataa |
298 |
Q |
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| T |
42028828 |
atatatggatcatgaaaacagttgacaagcatcaatttcaccaaaatttaaaatgtgaaaagattctaattttctaagtttgtggagtaagctattataa |
42028729 |
T |
|
| Q |
299 |
ttaggtaagtgnnnnnnnnnntagaaatatagtaaaggacaaaggtggtaaggaggaggaagaggaaagtctgcacactgagatgttttttactgactta |
398 |
Q |
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| T |
42028728 |
ttaggtaagtgaaaaaaaaaatagaaatatagtaaaggacaaaggtggtaaggaggaggaagaggaaagtctgcacactgagatgttttttactgactta |
42028629 |
T |
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| Q |
399 |
aatgcgtatcagaactgtgttagggcagcgagagggagttgtcaaatcaagaaaagtaaaacttgcatgtttatctctttttcataaataataatattat |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42028628 |
aatgcgtatcagaactgtgttagggcagcgagagggagttgtcaaatcaagaaaagtaaaacttgcatgtttatctctttttcataaataataatattat |
42028529 |
T |
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| Q |
499 |
atggtgttatggagaagctattatggagtttctatagttgcactgactgt |
548 |
Q |
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| T |
42028528 |
atggtgttatggagaagctattatggagtttctatagttgcactgactgt |
42028479 |
T |
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