View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4964_high_2 (Length: 528)
Name: NF4964_high_2
Description: NF4964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4964_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 5218914 - 5219384
Alignment:
| Q |
1 |
aaaaaggggtgtgatgggactcatgtgtctattagtagatgcaaggacagggggtattgggtggtgaacttggtgtgtagggaccgtcccaagttgtttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5218914 |
aaaaaggggtgtgatgggactcatgtgtctattagtagatgcaaggacagggggtattgggtggtgaacttggtgtgtagggaccgtcccaagttgtttt |
5219013 |
T |
|
| Q |
101 |
ttgatacggtgtgtgtgcttagggacatgcagtatgtagtctttcatgctgccattagttccaagaaatccatagccgatcaggtacttcatcgtcactt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5219014 |
ttgatacggtgtgtgtgcttagggacatgcagtatgtagtctttcatgccgccattagttccaagaaatccatagccgatcaggtacttcatcgtcactt |
5219113 |
T |
|
| Q |
201 |
tacaagttgattttataataaagttgagttgaagtcaaactataatatacaatgaatccgtcattaattacattgatccgtgtcttgcaggagtactata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5219114 |
tacaagttgattttataataaagttgagttgaagtcaaactataatatacgatgaatccgtcattaattacattgatccgtgtcttgcaggagtactata |
5219213 |
T |
|
| Q |
301 |
taaggcacaagtggaatggtttagctctcagaacccaaagtgagagggaaaagcttatcttatgcataatagctgcaatagagcgtagagtgtcgcatgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5219214 |
taaggcacaagtggaatggtttagctctcagaacccaaagtgagagggaaaagcttatcttatgcataatagctgcaatagagcgtagagtgtcgcatgt |
5219313 |
T |
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| Q |
401 |
aagtcctataaaacctagcattaagattttccttttatgtatccttgttattatgctataatacactgatg |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5219314 |
aagtcctataaaacctagcattaagattttccttttatgtatccttgttattatgctataatgcactgatg |
5219384 |
T |
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