View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4964_high_5 (Length: 360)
Name: NF4964_high_5
Description: NF4964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4964_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 359
Target Start/End: Complemental strand, 20633335 - 20632996
Alignment:
| Q |
20 |
gacatcatcaacaagtccttaacagcaaaagcactttcttcaaatcttgaatccattcctgaagttccttatatgacagctagaatctttcaatctcaat |
119 |
Q |
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| T |
20633335 |
gacatcatcaataagtccttaacagcaaaagcactttcttcaaatcttgaatccattcctgaagttccttatatgacagctagaatctttcaatctcaat |
20633236 |
T |
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| Q |
120 |
ttacatatagatttaatgtaacttccggtccgaaattcattcgccttcatttctacccttattcttatttggacttcaacatctcaaaagctttcttatc |
219 |
Q |
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| T |
20633235 |
ttacatatagatttaatgtaacttccggtccgaaattcattcgccttcatttctaccctttttcttatttggacttcaacatctcaaaagctttcttatc |
20633136 |
T |
|
| Q |
220 |
tgtcactgctggtaacttcactcttctgcataactttagtgtttctctaaatgtagattactttaacatagcatatttaatgaaagaattcattgtgcat |
319 |
Q |
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| T |
20633135 |
tgtcactgccggtaacttcactcttctgcataactttagtgtttctctaaatgtagattactttaacttagcatatttaatgaaagaattcattgtgcat |
20633036 |
T |
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| Q |
320 |
gtaaaaggaaatagtttggaacttactttcactccatcat |
359 |
Q |
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| T |
20633035 |
gtaaaaggaaatagtttggaacttactttcactccatcat |
20632996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 23 - 359
Target Start/End: Complemental strand, 20649428 - 20649095
Alignment:
| Q |
23 |
atcatcaacaagtccttaacagcaaaagcactttcttcaaatcttgaatccattcctgaagttccttatatgacagctagaatctttcaatctcaattta |
122 |
Q |
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| T |
20649428 |
atcatcaacaagtccttaacagcaaaagcac---cttcaaatcttcaatccattcctgaagttccttatatgacagctagaatctttcaatctcaattta |
20649332 |
T |
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| Q |
123 |
catatagatttaatgtaacttccggtccgaaattcattcgccttcatttctacccttattcttatttggacttcaacatctcaaaagctttcttatctgt |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||||||||||||| |
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| T |
20649331 |
catatagatttaatgtaacttccggtccgaaattcattcgccttcatttctaccctttttcttatttgaatttcaatatctcaaaagctttcttatctgt |
20649232 |
T |
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| Q |
223 |
cactgctggtaacttcactcttctgcataactttagtgtttctctaaatgtagattactttaacatagcatatttaatgaaagaattcattgtgcatgta |
322 |
Q |
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| T |
20649231 |
cactgctggtaacttcactcttctgcataactttagtgtttctctaaatgtagattactttaacttagcatatttaatgaaagaattcattgtgcatgta |
20649132 |
T |
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| Q |
323 |
aaaggaaatagtttggaacttactttcactccatcat |
359 |
Q |
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| T |
20649131 |
aaaggaaatagtttggaacttactttcactccatcat |
20649095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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