View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4964_high_6 (Length: 338)
Name: NF4964_high_6
Description: NF4964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4964_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 10132188 - 10131856
Alignment:
| Q |
1 |
cctttgtgtctaagcatgtaagtcatttgtttgattgaatgaacttgtagacagaacaagacataaatatgaatttgaatatgggaaaagaaatttttga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
10132188 |
cctttgtgtctaagcatgtaagtcatttgtttgattgaatgaacttgtagacagaacaagacataaatatgaatttgaataagggaaaagaaatttttta |
10132089 |
T |
|
| Q |
101 |
tgactggagtcttgatcaagaaaacttcgataatttgtaatgtaaatccatatagtttataagtaagattctttcttacatgtattttacatatagtttt |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10132088 |
tgattggagtcttgatcaagaaaacttcgataatttgtaatgtaaatccatatagtttataagtaagactctttcttacatgtattttacatatagtttt |
10131989 |
T |
|
| Q |
201 |
gaaaaatttgtcaacatgtgagacggaagtcgaacaaagaatctcttagttggagatatctttcgatcaaattaaagaggctatagtgaactacatgcgc |
300 |
Q |
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| T |
10131988 |
gaaaaatttgtcaacatgtgagacggaagtcgaacaaagaatctcttagttggagatatctttggatcaaattaaagaggctatagtgaactacatgcgc |
10131889 |
T |
|
| Q |
301 |
caacaagttgtggtgtctgatgtctctgcttct |
333 |
Q |
| |
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||||||| |||||||||||||||| ||||||| |
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| T |
10131888 |
caacaagctgtggtgtctgatgtcgatgcttct |
10131856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 10358033 - 10358365
Alignment:
| Q |
1 |
cctttgtgtctaagcatgtaagtcatttgtttgattgaatgaacttgtagacagaacaagacataaatatgaatttgaatatgggaaaagaaatttttga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10358033 |
cctttgtgtctaagcatgtaagtcatttgtttgattgaatgaacttgtagacagaacaagacataaatatgaatttgaataagggaaaagaaatttttga |
10358132 |
T |
|
| Q |
101 |
tgactggagtcttgatcaagaaaacttcgataatttgtaatgtaaatccatatagtttataagtaagattctttcttacatgtattttacatatagtttt |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
10358133 |
tgattggagtcttgatcaagaaaacttcgataatttgtaatgtaaatccatatagtttataagtaagactctttcttacatatattttacatatagtttt |
10358232 |
T |
|
| Q |
201 |
gaaaaatttgtcaacatgtgagacggaagtcgaacaaagaatctcttagttggagatatctttcgatcaaattaaagaggctatagtgaactacatgcgc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10358233 |
gaaaaatttgtcaacatgtgagacggaagtcgaacaaagaatctcttagttggagatatctttggatcaaattaaagaggctatagtgaactacatgcgc |
10358332 |
T |
|
| Q |
301 |
caacaagttgtggtgtctgatgtctctgcttct |
333 |
Q |
| |
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| T |
10358333 |
caacaagttgtggtgtctgaagtcaatgcttct |
10358365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 2 - 128
Target Start/End: Complemental strand, 10101148 - 10101022
Alignment:
| Q |
2 |
ctttgtgtctaagcatgtaagtcatttgtttgattgaatgaacttgtagacagaacaagacataaatatgaatttgaatatgggaaaagaaatttttgat |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10101148 |
ctttgtgtctaagcatgtaagtcatttgtttgattgaatgaacttgtagacagaacaagacataaatatgaatttgaataagggaaaagaaatttttgat |
10101049 |
T |
|
| Q |
102 |
gactggagtcttgatcaagaaaacttc |
128 |
Q |
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|||||||||| |||||||||||||||| |
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| T |
10101048 |
gactggagtcctgatcaagaaaacttc |
10101022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 2 - 128
Target Start/End: Complemental strand, 10212073 - 10211947
Alignment:
| Q |
2 |
ctttgtgtctaagcatgtaagtcatttgtttgattgaatgaacttgtagacagaacaagacataaatatgaatttgaatatgggaaaagaaatttttgat |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10212073 |
ctttgtgtctaagcatgtaagtcatttgtttgattgaatgaacttgtagacagaacaagacataaatatgaatttgaataagggaaaagaaatttttgat |
10211974 |
T |
|
| Q |
102 |
gactggagtcttgatcaagaaaacttc |
128 |
Q |
| |
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|||||||||| |||||||||||||||| |
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| T |
10211973 |
gactggagtcctgatcaagaaaacttc |
10211947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 131 - 324
Target Start/End: Complemental strand, 10100972 - 10100786
Alignment:
| Q |
131 |
taatttgtaatgtaaatccatatagtttataagtaagattctttcttacatgtattttacatatagttttgaaaaatttgtcaacatgtgagacggaagt |
230 |
Q |
| |
|
|||||| |||||| | | ||||||||||||||| || | |||||||||||||||||| |||||||||||| |||||||| ||||||||||| ||| |
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| T |
10100972 |
taatttataatgtcagttcatatagtttataagcaatactctttcttacatgtatttcacatatagtttttgaaaatttgccaacatgtgagttcctagt |
10100873 |
T |
|
| Q |
231 |
cgaacaaagaatctcttagttggagatatctttcgatcaaattaaagaggctatagtgaactacatgcgccaacaagttgtggtgtctgatgtc |
324 |
Q |
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| |||||||||| ||| || | |||||| ||| ||||| |||||||| || |||||||||||||| ||||||||||||||| ||||||| |
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| T |
10100872 |
caaacaaagaat------gttagaaagatctttggatgaaattgaagaggctcta-tgaactacatgcgctaacaagttgtggtgtttgatgtc |
10100786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 10211897 - 10211806
Alignment:
| Q |
131 |
taatttgtaatgtaaatccatatagtttataagtaagattctttcttacatgtattttacatatagttttgaaaaatttgtcaacatgtgag |
222 |
Q |
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|||||| |||||| | | ||||||||||||||| || | |||||||||||||||||| |||||||||||| |||||||| ||||||||||| |
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| T |
10211897 |
taatttataatgtcagttcatatagtttataagcaatactctttcttacatgtatttcacatatagtttttgaaaatttgccaacatgtgag |
10211806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 10208760 - 10208695
Alignment:
| Q |
258 |
atctttcgatcaaattaaagaggctatagtgaactacatgcgccaacaagttgtggtgtctgatgtc |
324 |
Q |
| |
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| T |
10208760 |
atctttggatgaaattgaagaggctcta-tgaactacatgcgctaacaagttgtggtgtttgatgtc |
10208695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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