View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4964_high_7 (Length: 338)
Name: NF4964_high_7
Description: NF4964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4964_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 23701010 - 23700751
Alignment:
| Q |
1 |
cacagaagttttattgtccttttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtcatagatt |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23701010 |
cacagaaattttattgtccttttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtcatagatt |
23700911 |
T |
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| Q |
101 |
gttctgtgcacaatgtaaggtttcatggcacacaggtgttggttgtaaagagtttcaaagcttgaaagtcggcgagtgagggagggaagatctaatggcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| |||||| |||||||||||||||| |
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| T |
23700910 |
gttctgtgcacaatgtaaggtttcatggcacacaggtgttgattgtaaagtgtttcaaagcttgaaagacggcgagcgagggatggaagatctaatggcc |
23700811 |
T |
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| Q |
201 |
atggaacttgctaagaacaagagatggaaaagatgtcctaagtgtggcttctatgtggaa |
260 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23700810 |
atggaacttgcaaagaacaagagatggaaaagatgtccaaagtgtggcttctatgtggaa |
23700751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 23694791 - 23695050
Alignment:
| Q |
1 |
cacagaagttttattgtccttttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtcatagatt |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23694791 |
cacagaaattttattgtccttttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtcatagatt |
23694890 |
T |
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| Q |
101 |
gttctgtgcacaatgtaaggtttcatggcacacaggtgttggttgtaaagagtttcaaagcttgaaagtcggcgagtgagggagggaagatctaatggcc |
200 |
Q |
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| T |
23694891 |
gttctgtgcacaatgtaaggtttcatggcacataggtgttgattgtaaagagtttctaagcttgaaagatggtgagcgagggagggaagatctaatggcc |
23694990 |
T |
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| Q |
201 |
atggaacttgctaagaacaagagatggaaaagatgtcctaagtgtggcttctatgtggaa |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23694991 |
atggaacttgctaagaacaagagatggaaaagatgtccaaagtgtggcttctatgtggaa |
23695050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 15 - 259
Target Start/End: Original strand, 23696936 - 23697180
Alignment:
| Q |
15 |
tgtccttttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtcatagattgttctgtgcacaat |
114 |
Q |
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| T |
23696936 |
tgtccttttaatgattgttcagctatgttggtgaatgatgaagaggaagttgtaaccgtttctgagtgtcctcattgtaatagattattttgtgcacaat |
23697035 |
T |
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| Q |
115 |
gtaaggtttcatggcacacaggtgttggttgtaaagagtttcaaagcttgaaagtcggcgagtgagggagggaagatctaatggccatggaacttgctaa |
214 |
Q |
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| T |
23697036 |
gtaaggtttcatggcactctggtgttgattgtagagagtttcaaagcttggaagatggcgagcgagggaggaaagatctaatggccatggaacttgctaa |
23697135 |
T |
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| Q |
215 |
gaacaagagatggaaaagatgtcctaagtgtggcttctatgtgga |
259 |
Q |
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| T |
23697136 |
gaacaagagatggaaaagatgtccaaagtgcagcttctatgtgga |
23697180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 8149144 - 8148913
Alignment:
| Q |
10 |
tttattgtccttttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtcatagattgttctgtgc |
109 |
Q |
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|||||||||||||||| |||||||||||||||||| ||||||||| ||| | | |||||| | ||||||||||||||||||||||| | ||||| || |
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| T |
8149144 |
tttattgtccttttaaggattgttcagctatgttggtgaatgatggaaatgaagttgtgagaattacggaatgtccacattgtcatagactattctgcgc |
8149045 |
T |
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| Q |
110 |
acaatgtaaggtttcatggcacacaggtgttggttgtaaagagtttcaaagcttgaaagtcggcgagt--gagggagg--gaagatctaatggccatgga |
205 |
Q |
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||||||| | ||| |||||||||| | || | ||||| ||||||||||| |||||| |||| || |||| ||| |||||||||||| |||| |
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| T |
8149044 |
acaatgtcaagttccatggcacacggaagtcgattgtagagagtttcaaattttgaaaaaaggcg-gtccgaggaaggatttagatctaatggctctgga |
8148946 |
T |
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| Q |
206 |
acttgctaagaacaagagatggaaaagatgtcc |
238 |
Q |
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|||||||||||| |||| ||||||||| ||||| |
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| T |
8148945 |
acttgctaagaaaaagaaatggaaaaggtgtcc |
8148913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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