View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4965-Insertion-1 (Length: 1092)
Name: NF4965-Insertion-1
Description: NF4965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4965-Insertion-1 |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 533 - 1036
Target Start/End: Complemental strand, 2412168 - 2411659
Alignment:
| Q |
533 |
agggcttatagagtattataaagggtgttgtatcatgtattgcttgaattaatgtgcagggggactcatgttcaagttacctgcaagcaatcttcagtat |
632 |
Q |
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| T |
2412168 |
agggcttatagagtattataaagggtgttgtatcatgtattgcttgaattaatgtgcagggggactcatgttcaagttacctgcaagcaatcttcagtat |
2412069 |
T |
|
| Q |
633 |
gtgacatctataacattcttacttacaacctattccaagtatatggcagttacaaagcatacatttaactgtggtggcgtctttgtcactccaaatacct |
732 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2412068 |
gtgacatctataacattcttacttacaacctactccaagtatatggcagctacaaagcatacatttaactgtggtggcgtctttgtcactccaaatacct |
2411969 |
T |
|
| Q |
733 |
taagaactgttgcgaaaagacaggcaagtcttattattattttaacaaaaaagttgtaacaatctcctctcctctttgttaataaaatttgttgtaaaat |
832 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2411968 |
taagaactgttgcgaaaagacaggcaagtcttaatattattttaacaaaaaagttgtaacaatctcctctcctctttgttaataaaatttgttgtaaaat |
2411869 |
T |
|
| Q |
833 |
ttcaggtagactatatattaggtgaaaatccacttagaatgtcctatatggtaggttatggtccatattttcccaagagaattcaccacagaggatcttc |
932 |
Q |
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| T |
2411868 |
ttcaggtagactatatattaggtgaaaatccacttagaatgtcctatatggtaggttatggtccatattttcccaagagaattcaccacagaggatcttc |
2411769 |
T |
|
| Q |
933 |
attgccttcactatcagttcatccacagac-ataggatgtgatggaggtttcaatccg-ttttccattc-atgaat-ag-accctaatatatt-gttgga |
1026 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||||| |||||| |
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| T |
2411768 |
attgccttcactatcagttcatccacagacaataggatgtgatggaggtttcaatccgtttttccattcaatgaatcagaaccctaatatattggttgga |
2411669 |
T |
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| Q |
1027 |
gccatagttg |
1036 |
Q |
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|||||||||| |
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| T |
2411668 |
gccatagttg |
2411659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 8 - 464
Target Start/End: Complemental strand, 2412696 - 2412240
Alignment:
| Q |
8 |
gttctaataggcattatttatcttcaggatgaactattgtggggagctgcatggctttttagagcaacaaatgctgctaaatactacaatttggttaagt |
107 |
Q |
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| T |
2412696 |
gttctaataggcattatttatcttcaggatgaactattgtggggagctgcatggctttttagagcaacaaatgctgttaaatactacaatttggttaagt |
2412597 |
T |
|
| Q |
108 |
ctttgggagctgatgatcaacctgatatcttcagctgggataacaagtatgctggtgcgcatgtccttctctcaagggtaagttggatttcattgaaaat |
207 |
Q |
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| T |
2412596 |
ctttgggagctgatgatcaacctgatatcttcagctgggataacaaatatgctggtgcacatgtccttctctcaagggtaagttggatttcattgaaaat |
2412497 |
T |
|
| Q |
208 |
gtgaataaccaatttgtttctctaaactttgctgattcattagttttctattgttactgcagagagcattgttgaatggtgataagaactttgatcaata |
307 |
Q |
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| T |
2412496 |
gtgaataaccaatttgtttgtctaaactttgctgattcattagttttctattgttactgcagagagcattgttgaatggtgataagaactttgatcaata |
2412397 |
T |
|
| Q |
308 |
taggaaagaagctgataatttcatgtgcaagatcttgcctaattcaccctctacaactacacagtatacacaaggtaaaagcaacatgactatcaatatt |
407 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2412396 |
taggcaagaagctgataatttcatgtgcaagatcttgcccaattcaccctcttcaactacacagtatacacaaggtaaaagcaacatgactatcaatatt |
2412297 |
T |
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| Q |
408 |
ttgaccttcaaagaagtaatcataatttgaaaagtggtaccatcaactattacagta |
464 |
Q |
| |
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| T |
2412296 |
ttgactttcaaagaagtaatcataatttgaaaagtggtaccatcaactattatagta |
2412240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 596 - 1036
Target Start/End: Complemental strand, 14490 - 14044
Alignment:
| Q |
596 |
actcatgttcaagttacctgcaagcaatcttcagtatgtgacatctataacattcttacttacaacctattccaagtatatggcagttacaaagcataca |
695 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
14490 |
actcatgttcaagttacctgcaagcaatcttcagtatgtgacatctataacattcttacttacaacctattccaagtatatggcagctacaaagcacaca |
14391 |
T |
|
| Q |
696 |
tttaactgtggtggcgtctttgtcactccaaataccttaagaactgttgcgaaaagacaggcaagtcttattattattttaacaaaaaagttgtaacaat |
795 |
Q |
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| T |
14390 |
tttaactgtggtggcgtctttgtcactccgaataccttaagaactgttgcgaaaagacaggcaagtcttattattattttaacaaaaaagttgtaacaat |
14291 |
T |
|
| Q |
796 |
ctcctctcctctttgttaataaaatttgttgtaaaatttcaggtagactatatattaggtgaaaatccacttagaatgtcctatatggtaggttatggtc |
895 |
Q |
| |
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||| |||||| |||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14290 |
ctcttctcctttttgctgataaaatttgttgtaaaatttcaggtagacaatatattaggtgaaaatccacttagaatgtcctatatggtaggttatggtc |
14191 |
T |
|
| Q |
896 |
catattttcccaagagaattcaccacagaggatcttcattgccttcactatcagttcatccacagac-ataggatgtgatggaggtttcaatccg-tttt |
993 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| |
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| T |
14190 |
catattttcccaagagaattcaccacagaggatcttcattgccttcactatcagttcatccgcagacaataggatgtgatggaggtttcaatccgttttt |
14091 |
T |
|
| Q |
994 |
ccattc-atgaat-ag-accctaatatatt-gttggagccatagttg |
1036 |
Q |
| |
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|||||| |||||| || ||||||||||||| |||||||||||||||| |
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| T |
14090 |
ccattcaatgaatcagaaccctaatatattggttggagccatagttg |
14044 |
T |
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