View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4965-Insertion-11 (Length: 384)
Name: NF4965-Insertion-11
Description: NF4965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4965-Insertion-11 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 8 - 384
Target Start/End: Original strand, 21010310 - 21010686
Alignment:
| Q |
8 |
ggaatctcaaaagactccaatggtggtggaggatgtctccattgaggcaatggtcctgcaagcaaaagggtctgaagcaaaggaccagctttcatcactg |
107 |
Q |
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| T |
21010310 |
ggaatctcaaaagactccaatggtggtggtggatgtctccattgaggtaatggtcctgcaagtaaaagggtctgaagcaaaggaccagctttcatcactg |
21010409 |
T |
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| Q |
108 |
cttgtaaaagtttacctttttcaggcaaaggtttatcttttgctattgaatcaatcatcatcatcattggttgttctgttcttgtttgttgtggggagga |
207 |
Q |
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| T |
21010410 |
cttgtaaaagtttacctttttcaggcaaaggtttatcttttgctattgaatcaatcatcatcatcattggttgttctgttcttgtttgttgtggggagga |
21010509 |
T |
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| Q |
208 |
aactatgctttcttcacaatctgatagtgatattccattgttggaagattcaattcctctcttttgtatttgttcatcttcaatgcttgagattccagac |
307 |
Q |
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| T |
21010510 |
tactatgctttcttcacaatctgatagtgatattccattgttggaagattcaattcctctcttttgtatttgttcatcttcaatgcttgagattccagac |
21010609 |
T |
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| Q |
308 |
aaaggatcttggttttgttgcttttgttgttggaaaagtaacttttctaagaaaagtctttggcatttttcttgtgc |
384 |
Q |
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| T |
21010610 |
aaaggatcttggttttgttgcttttgttgttggaaaagtaacttttctaagaaaagtctttggcatttttcttgtgc |
21010686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 23323857 - 23323913
Alignment:
| Q |
80 |
tgaagcaaaggaccagctttcatcactgcttgtaaaagtttacctttttcaggcaaa |
136 |
Q |
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| T |
23323857 |
tgaagcaaaggaccagcatcaatcacagcttgtaaaagtttacccttttgaggcaaa |
23323913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 35450187 - 35450063
Alignment:
| Q |
8 |
ggaatctcaaaagactccaatggtggtggaggatgtctccattgaggcaatggtcctgcaagcaaaagggtctgaagcaaaggaccagctttcatcactg |
107 |
Q |
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||||||||||||||||| | ||||| ||||| ||| |||||||||| | |||||||||||| | ||| || | ||| | |||||||||||||||||||| |
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| T |
35450187 |
ggaatctcaaaagactcaagaggtggaggagggtgtttccattgaggaagtggtcctgcaagaagaagagttttaagaagaggaccagctttcatcactg |
35450088 |
T |
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| Q |
108 |
cttgtaaaagtttacctttttcagg |
132 |
Q |
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| T |
35450087 |
cctgcaaaagtttacctttttcagg |
35450063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 384
Target Start/End: Complemental strand, 35449888 - 35449835
Alignment:
| Q |
331 |
ttgttgttggaaaagtaacttttctaagaaaagtctttggcatttttcttgtgc |
384 |
Q |
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|||||| ||||||| || |||||| |||| ||||||||| |||||||||||||| |
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| T |
35449888 |
ttgttgatggaaaactagcttttccaagagaagtctttgacatttttcttgtgc |
35449835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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