View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4965-Insertion-3 (Length: 894)

Name: NF4965-Insertion-3
Description: NF4965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4965-Insertion-3
NF4965-Insertion-3
[»] chr7 (15 HSPs)
chr7 (8-272)||(11744821-11745087)
chr7 (8-250)||(11738315-11738557)
chr7 (270-555)||(11738553-11738841)
chr7 (569-722)||(11738911-11739064)
chr7 (757-887)||(11739106-11739246)
chr7 (762-801)||(22690047-22690086)
chr7 (767-801)||(4398337-4398371)
chr7 (350-388)||(12141099-12141137)
chr7 (350-388)||(28044548-28044586)
chr7 (350-388)||(48061683-48061721)
chr7 (350-388)||(48316611-48316649)
chr7 (768-801)||(5458088-5458121)
chr7 (768-813)||(25602916-25602961)
chr7 (768-801)||(29237574-29237607)
chr7 (768-801)||(39280835-39280868)
[»] chr4 (14 HSPs)
chr4 (762-801)||(24675080-24675119)
chr4 (350-388)||(32766793-32766831)
chr4 (350-388)||(40065986-40066024)
chr4 (350-388)||(2521058-2521096)
chr4 (350-388)||(3335939-3335977)
chr4 (350-388)||(4142556-4142594)
chr4 (350-388)||(19853304-19853342)
chr4 (350-388)||(21686034-21686072)
chr4 (350-388)||(26633463-26633501)
chr4 (759-801)||(33900732-33900774)
chr4 (350-388)||(56040438-56040476)
chr4 (759-788)||(12712026-12712055)
chr4 (768-809)||(17216146-17216187)
chr4 (759-788)||(24063216-24063245)
[»] chr3 (13 HSPs)
chr3 (762-801)||(22486694-22486733)
chr3 (763-801)||(53681889-53681927)
chr3 (759-802)||(14741804-14741847)
chr3 (350-388)||(6954488-6954526)
chr3 (763-801)||(30200837-30200875)
chr3 (769-815)||(35492790-35492836)
chr3 (350-388)||(40487583-40487621)
chr3 (350-388)||(43017146-43017184)
chr3 (350-388)||(52922909-52922947)
chr3 (350-388)||(54149249-54149287)
chr3 (766-819)||(8113577-8113630)
chr3 (768-813)||(10926468-10926513)
chr3 (768-801)||(13800678-13800711)
[»] chr5 (8 HSPs)
chr5 (350-388)||(27576160-27576198)
chr5 (759-801)||(1642345-1642387)
chr5 (350-388)||(6011930-6011968)
chr5 (350-388)||(9113517-9113555)
chr5 (350-388)||(14726253-14726291)
chr5 (350-388)||(24229576-24229614)
chr5 (350-388)||(38007615-38007653)
chr5 (768-801)||(18278276-18278309)
[»] chr6 (8 HSPs)
chr6 (765-818)||(10118911-10118964)
chr6 (768-812)||(32149138-32149182)
chr6 (769-816)||(12276249-12276296)
chr6 (768-799)||(12425859-12425890)
chr6 (350-388)||(7514995-7515033)
chr6 (350-388)||(12170728-12170766)
chr6 (350-388)||(32327012-32327050)
chr6 (768-801)||(32193876-32193909)
[»] chr8 (8 HSPs)
chr8 (766-801)||(18533680-18533715)
chr8 (349-388)||(21238047-21238086)
chr8 (763-814)||(24212168-24212219)
chr8 (350-388)||(10377935-10377973)
chr8 (768-801)||(29652229-29652262)
chr8 (768-813)||(31336824-31336869)
chr8 (350-387)||(40211091-40211128)
chr8 (768-801)||(44019560-44019593)
[»] chr2 (11 HSPs)
chr2 (760-815)||(18231482-18231537)
chr2 (762-801)||(35727448-35727487)
chr2 (350-388)||(4779022-4779060)
chr2 (350-388)||(5427662-5427700)
chr2 (350-388)||(31193129-31193167)
chr2 (350-388)||(31788725-31788763)
chr2 (350-388)||(33923974-33924012)
chr2 (350-388)||(38445435-38445473)
chr2 (764-813)||(8788307-8788356)
chr2 (768-801)||(23250337-23250370)
chr2 (768-801)||(32458313-32458346)
[»] chr1 (11 HSPs)
chr1 (349-388)||(5984077-5984116)
chr1 (766-801)||(25365011-25365046)
chr1 (350-388)||(11462274-11462312)
chr1 (350-388)||(21687640-21687678)
chr1 (350-388)||(34878070-34878108)
chr1 (350-388)||(36894200-36894238)
chr1 (350-388)||(49504387-49504425)
chr1 (762-799)||(19533189-19533226)
chr1 (768-801)||(27023672-27023705)
chr1 (768-801)||(30795712-30795745)
chr1 (768-801)||(41711727-41711760)
[»] scaffold0136 (1 HSPs)
scaffold0136 (350-388)||(9834-9872)
[»] scaffold0026 (1 HSPs)
scaffold0026 (768-809)||(75328-75369)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 272
Target Start/End: Original strand, 11744821 - 11745087
Alignment:
Q  8 tctggaatatgttgtgggtatcatgaagatggataccatgtttattgtggaaataaagcaacgattaatggtaaagaaatagttgctagttcttgtgaag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11744821 tctggaatatgttgtgggtatcatgaagatggataccatgtttattgtggaaataaagcaatgattaatggtaaagaaatagttgctagttcttgtgaag 11744920  T
Q  108 atccttcaaagtacattagttgggatggagtgcactatactgaagcagcaaatcaatggattgcaaatagaatacttgatggttccttttctgatccacc 207  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |    
T  11744921 atccttcaaagtacattagttgggatggagtgcactacactgaagcagcaaatcaatggattgcaaatagaatacttaatggttccttttcagatccatc 11745020  T
Q  208 acttcctattgcacaatcatgtcaaattactcattagcatttaca--ctacctattctaattctatt 272  Q
    ||||||||||||||| |||||||||||||||||||||||||||||  || |||||| ||||||||||    
T  11745021 acttcctattgcacactcatgtcaaattactcattagcatttacatcctgcctattttaattctatt 11745087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 11738315 - 11738557
Alignment:
Q  8 tctggaatatgttgtgggtatcatgaagatggataccatgtttattgtggaaataaagcaacgattaatggtaaagaaatagttgctagttcttgtgaag 107  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||    
T  11738315 tctggaatatgttgtgggtatcatgaaaatggataccatgtttattgtgggaataaagcaacgattaatggtaaagaaattgttacaagttcttgtgaag 11738414  T
Q  108 atccttcaaagtacattagttgggatggagtgcactatactgaagcagcaaatcaatggattgcaaatagaatacttgatggttccttttctgatccacc 207  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  11738415 atccttcaaagtacattagttgggatggagtgcactacactgaagcagcaaatcaatggattgcaaatagaatacttgatggttctttttcagatccacc 11738514  T
Q  208 acttcctattgcacaatcatgtcaaattactcattagcattta 250  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11738515 acttcctattgcacaatcatgtcaaattactcattagcattta 11738557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 270 - 555
Target Start/End: Original strand, 11738553 - 11738841
Alignment:
Q  270 atttacaatgcaagagtggtttaatcttacctctatttattcattatagattacagtttctttcttcattcgctttgttttctatcgatttgaatgaatg 369  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  11738553 atttataatgcaagagtggtttaatcttacctctatttattcattctagattacagtttctttcttc-ttcgctttgttttctatcaatttgaatgaatg 11738651  T
Q  370 aat----attgtttagtttttgtnnnnnnnnnntcatgaatagcttttgataaagacatcgttttactttatgtaaccgctactataattacatttgtaa 465  Q
    |||    ||||||||||||||||          |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11738652 aatgaatattgtttagtttttgtcaaaaaaaa-tcatgaatagctttcgataaagacatcgtttgactttatgtaaccgctactataattacatttgtaa 11738750  T
Q  466 ccgtatgaaccatagtttaattttatggaatc-aagaattgatgtttgtcgcacttgaattagcacttgcaaaattttcattgatcttaac 555  Q
    ||||||||||||||||| |||||||||||||| ||  |||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  11738751 ccgtatgaaccatagttgaattttatggaatcaaatcattgatgtttgttgcacttgaattagcacttgcaaaactttcattgatcttaac 11738841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 569 - 722
Target Start/End: Original strand, 11738911 - 11739064
Alignment:
Q  569 attgatgtaaaatatttattcatgactacaataaacttgaacttcaacgtttgcaaagagtaaaaacgtacaaataaatctaaactgaatttatgagatt 668  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||    
T  11738911 attgatgtaaaatatttattcatgactacaataaacttgaacttcaacgtttgaaaagagtaaaaacgtacaaataaatctaaactgagtttatgaaatt 11739010  T
Q  669 aaattgacaagaaaataagtatttgaaaagtaaataacttagaaagtaaaatac 722  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11739011 aaattgacaagaaaataagtatttgaaaagtaaataacttagaaagtaaaatac 11739064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 757 - 887
Target Start/End: Original strand, 11739106 - 11739246
Alignment:
Q  757 cgactccaaatcttgcatatattatgcattgttcttagcaactgaccttagcttacgggaacagtaaaatac--------aaatgattt-caaagtaaag 847  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||        |||||||||  |||||||||    
T  11739106 cgactccagatcttgcatatattatgcattgttcttagcaactgaccttagcttatggggacagtaaaatacaaaattttaaatgatttgaaaagtaaag 11739205  T
Q  848 tgcagg-aatataaaatgtaggtaagataaacgaatttgaa 887  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  11739206 tgcaggaaatataaaatgtaggtaagataaacgaatttgaa 11739246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 762 - 801
Target Start/End: Original strand, 22690047 - 22690086
Alignment:
Q  762 ccaaatcttgcatatattatgcattgttcttagcaactga 801  Q
    ||||| ||||||||||||||||||| ||||||||||||||    
T  22690047 ccaaaccttgcatatattatgcattattcttagcaactga 22690086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 767 - 801
Target Start/End: Complemental strand, 4398371 - 4398337
Alignment:
Q  767 tcttgcatatattatgcattgttcttagcaactga 801  Q
    ||||||||||||||||||||||||||| |||||||    
T  4398371 tcttgcatatattatgcattgttcttaccaactga 4398337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 12141137 - 12141099
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  12141137 tctatcgatttgaatgaatgaatatcgttttgtttttgt 12141099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 28044586 - 28044548
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  28044586 tctatcgatttgaatgaatgaatatcgttttgtttttgt 28044548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 48061683 - 48061721
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  48061683 tctatcgatttgaatgaatgaatatcgttttgtttttgt 48061721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 48316649 - 48316611
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  48316649 tctatcgatttgaatgaatgaatatcgttttgtttttgt 48316611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 801
Target Start/End: Original strand, 5458088 - 5458121
Alignment:
Q  768 cttgcatatattatgcattgttcttagcaactga 801  Q
    |||||||||||||||||||||||||| |||||||    
T  5458088 cttgcatatattatgcattgttcttatcaactga 5458121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 813
Target Start/End: Complemental strand, 25602961 - 25602916
Alignment:
Q  768 cttgcatatattatgcattgttcttagcaactgaccttagcttacg 813  Q
    |||||||||||||||||||||||||| ||| ||| || ||||||||    
T  25602961 cttgcatatattatgcattgttcttatcaattgagctaagcttacg 25602916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 801
Target Start/End: Original strand, 29237574 - 29237607
Alignment:
Q  768 cttgcatatattatgcattgttcttagcaactga 801  Q
    |||||||||||||||||||||||||| |||||||    
T  29237574 cttgcatatattatgcattgttcttaccaactga 29237607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 801
Target Start/End: Original strand, 39280835 - 39280868
Alignment:
Q  768 cttgcatatattatgcattgttcttagcaactga 801  Q
    |||||||||||||||||||||||||| |||||||    
T  39280835 cttgcatatattatgcattgttcttaccaactga 39280868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 762 - 801
Target Start/End: Original strand, 24675080 - 24675119
Alignment:
Q  762 ccaaatcttgcatatattatgcattgttcttagcaactga 801  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  24675080 ccaaatcttgcatatattatgcattgttcatagcaactga 24675119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 32766793 - 32766831
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  32766793 tctatcgatttgaatgaatgaatattgttttgtttttgt 32766831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 40066024 - 40065986
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  40066024 tctatcgatttgaatgaatgaatattgttttgtttttgt 40065986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 2521058 - 2521096
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  2521058 tctatcgatttgaatgaatgaatatcgttttgtttttgt 2521096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 3335977 - 3335939
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  3335977 tctattgatttgaatgaatgaatattgttttgtttttgt 3335939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 4142594 - 4142556
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  4142594 tctatcgatttgaatgaatgaatatcgttttgtttttgt 4142556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 19853342 - 19853304
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  19853342 tctatcgatttgaatgaatgaatatcgttttgtttttgt 19853304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 21686072 - 21686034
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  21686072 tctatcgatttgaatgaatgaatatcgttttgtttttgt 21686034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 26633501 - 26633463
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  26633501 tctatcgatttgaatgaatgaatatcgttttgtttttgt 26633463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 759 - 801
Target Start/End: Original strand, 33900732 - 33900774
Alignment:
Q  759 actccaaatcttgcatatattatgcattgttcttagcaactga 801  Q
    |||||| ||||||||||||||||||||||| |||| |||||||    
T  33900732 actccagatcttgcatatattatgcattgtccttaccaactga 33900774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 56040476 - 56040438
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  56040476 tctatcgatttgaatgaatgaatatcgttttgtttttgt 56040438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 759 - 788
Target Start/End: Original strand, 12712026 - 12712055
Alignment:
Q  759 actccaaatcttgcatatattatgcattgt 788  Q
    ||||||||||||||||||||||||||||||    
T  12712026 actccaaatcttgcatatattatgcattgt 12712055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 809
Target Start/End: Original strand, 17216146 - 17216187
Alignment:
Q  768 cttgcatatattatgcattgttcttagcaactgaccttagct 809  Q
    ||||||||||||||||||| |||||| ||||||| |||||||    
T  17216146 cttgcatatattatgcattattcttatcaactgagcttagct 17216187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 759 - 788
Target Start/End: Original strand, 24063216 - 24063245
Alignment:
Q  759 actccaaatcttgcatatattatgcattgt 788  Q
    ||||||||||||||||||||||||||||||    
T  24063216 actccaaatcttgcatatattatgcattgt 24063245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 762 - 801
Target Start/End: Complemental strand, 22486733 - 22486694
Alignment:
Q  762 ccaaatcttgcatatattatgcattgttcttagcaactga 801  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  22486733 ccaaatcttgcatatattatgcattgttcttaccaactga 22486694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 763 - 801
Target Start/End: Original strand, 53681889 - 53681927
Alignment:
Q  763 caaatcttgcatatattatgcattgttcttagcaactga 801  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  53681889 caaatcttgcatatattatgcattgttcttaccaactga 53681927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 759 - 802
Target Start/End: Complemental strand, 14741847 - 14741804
Alignment:
Q  759 actccaaatcttgcatatattatgcattgttcttagcaactgac 802  Q
    |||||||| ||||||||||||||||||||| |||| ||||||||    
T  14741847 actccaaaccttgcatatattatgcattgtccttaccaactgac 14741804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 6954526 - 6954488
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  6954526 tctatcgatttgaatgaatgaatatcgttttgtttttgt 6954488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 763 - 801
Target Start/End: Complemental strand, 30200875 - 30200837
Alignment:
Q  763 caaatcttgcatatattatgcattgttcttagcaactga 801  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  30200875 caaaccttgcatatattatgcattgtccttagcaactga 30200837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 815
Target Start/End: Complemental strand, 35492836 - 35492790
Alignment:
Q  769 ttgcatatattatgcattgttcttagcaactgaccttagcttacggg 815  Q
    ||||||||||||||||||||||||| ||||||| || || |||||||    
T  35492836 ttgcatatattatgcattgttcttaccaactgagctaagtttacggg 35492790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 40487583 - 40487621
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  40487583 tctatcgatttgaatgaatgaatatcgttttgtttttgt 40487621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 43017146 - 43017184
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  43017146 tctatcgatttgaatgaatgaatatcgttttgtttttgt 43017184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 52922947 - 52922909
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  52922947 tctatcgatttgaatgaatgaatatcgttttgtttttgt 52922909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 54149249 - 54149287
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| ||||| |||||||    
T  54149249 tctatcgatttgaatgaatgaatatcgtttaatttttgt 54149287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 766 - 819
Target Start/End: Original strand, 8113577 - 8113630
Alignment:
Q  766 atcttgcatatattatgcattgttcttagcaactgaccttagcttacgggaaca 819  Q
    ||||||||||||||||||||||| |||| ||||||| || |||| |||| ||||    
T  8113577 atcttgcatatattatgcattgtccttaccaactgagctaagctcacggaaaca 8113630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 813
Target Start/End: Complemental strand, 10926513 - 10926468
Alignment:
Q  768 cttgcatatattatgcattgttcttagcaactgaccttagcttacg 813  Q
    ||||||||||||||||||||| |||| ||||||| || ||||||||    
T  10926513 cttgcatatattatgcattgtccttaccaactgagctaagcttacg 10926468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 801
Target Start/End: Complemental strand, 13800711 - 13800678
Alignment:
Q  768 cttgcatatattatgcattgttcttagcaactga 801  Q
    |||||||||||||||||||||||||| |||||||    
T  13800711 cttgcatatattatgcattgttcttaccaactga 13800678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 27576198 - 27576160
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  27576198 tctatcgatttgaatgaatgaatattgttttgtttttgt 27576160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 759 - 801
Target Start/End: Complemental strand, 1642387 - 1642345
Alignment:
Q  759 actccaaatcttgcatatattatgcattgttcttagcaactga 801  Q
    |||||| |||||||||||||||||||||||| ||| |||||||    
T  1642387 actccagatcttgcatatattatgcattgtttttaccaactga 1642345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 6011968 - 6011930
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  6011968 tctatcgatttgaatgaatgaatatcgttttgtttttgt 6011930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 9113555 - 9113517
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  9113555 tctatcgatttgaatgaatgaatatcgttttgtttttgt 9113517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 14726291 - 14726253
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  14726291 tctatcgatttgaatgaatgaatatcgttttgtttttgt 14726253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 24229614 - 24229576
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  24229614 tctatcgatttgaatgaatgaatatcgttttgtttttgt 24229576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 38007615 - 38007653
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  38007615 tctatcgatttgaatgaatgaatatcgttttgtttttgt 38007653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 801
Target Start/End: Original strand, 18278276 - 18278309
Alignment:
Q  768 cttgcatatattatgcattgttcttagcaactga 801  Q
    |||||||||||||||||||||||||| |||||||    
T  18278276 cttgcatatattatgcattgttcttaccaactga 18278309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 765 - 818
Target Start/End: Complemental strand, 10118964 - 10118911
Alignment:
Q  765 aatcttgcatatattatgcattgttcttagcaactgaccttagcttacgggaac 818  Q
    |||||||||||||||||| |||||||||| ||||||| || |||| ||||||||    
T  10118964 aatcttgcatatattatgtattgttcttaccaactgagctaagctcacgggaac 10118911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 768 - 812
Target Start/End: Complemental strand, 32149182 - 32149138
Alignment:
Q  768 cttgcatatattatgcattgttcttagcaactgaccttagcttac 812  Q
    |||||||||||||||||||||||||| ||||||| || |||||||    
T  32149182 cttgcatatattatgcattgttcttaccaactgagctaagcttac 32149138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 816
Target Start/End: Original strand, 12276249 - 12276296
Alignment:
Q  769 ttgcatatattatgcattgttcttagcaactgaccttagcttacggga 816  Q
    ||||||||||||||||||||||||| ||||||| || || ||||||||    
T  12276249 ttgcatatattatgcattgttcttaccaactgagctaagtttacggga 12276296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 768 - 799
Target Start/End: Original strand, 12425859 - 12425890
Alignment:
Q  768 cttgcatatattatgcattgttcttagcaact 799  Q
    ||||||||||||||||||||||||||||||||    
T  12425859 cttgcatatattatgcattgttcttagcaact 12425890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 7515033 - 7514995
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  7515033 tctatcgatttgaatgaatgaatatcgttttgtttttgt 7514995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 12170728 - 12170766
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  12170728 tctatcgatttgaatgaatgaatatcgttttgtttttgt 12170766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 32327050 - 32327012
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  32327050 tctatcgatttgaatgaatgaatatcgttttgtttttgt 32327012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 801
Target Start/End: Original strand, 32193876 - 32193909
Alignment:
Q  768 cttgcatatattatgcattgttcttagcaactga 801  Q
    |||||||||||||||||||||||||| |||||||    
T  32193876 cttgcatatattatgcattgttcttaccaactga 32193909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 766 - 801
Target Start/End: Complemental strand, 18533715 - 18533680
Alignment:
Q  766 atcttgcatatattatgcattgttcttagcaactga 801  Q
    |||||||||||||||||||||||||||| |||||||    
T  18533715 atcttgcatatattatgcattgttcttaccaactga 18533680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 349 - 388
Target Start/End: Original strand, 21238047 - 21238086
Alignment:
Q  349 ttctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||| ||||||||||||||||||||||| ||||||||    
T  21238047 ttctatcaatttgaatgaatgaatattgttttgtttttgt 21238086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 763 - 814
Target Start/End: Original strand, 24212168 - 24212219
Alignment:
Q  763 caaatcttgcatatattatgcattgttcttagcaactgaccttagcttacgg 814  Q
    |||||||||||||||||||||||||| | ||||||||||  | |||||||||    
T  24212168 caaatcttgcatatattatgcattgtccatagcaactgagttaagcttacgg 24212219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 10377935 - 10377973
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  10377935 tctatcgatttgaatgaatgaatatcgttttgtttttgt 10377973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 801
Target Start/End: Complemental strand, 29652262 - 29652229
Alignment:
Q  768 cttgcatatattatgcattgttcttagcaactga 801  Q
    |||||||||||||||||||||||||| |||||||    
T  29652262 cttgcatatattatgcattgttcttatcaactga 29652229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 813
Target Start/End: Original strand, 31336824 - 31336869
Alignment:
Q  768 cttgcatatattatgcattgttcttagcaactgaccttagcttacg 813  Q
    ||||||||||||||||||||||| || |||||||| | ||||||||    
T  31336824 cttgcatatattatgcattgttcctaccaactgacttaagcttacg 31336869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 387
Target Start/End: Complemental strand, 40211128 - 40211091
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttg 387  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  40211128 tctatcgatttgaatgaatgaatatcgttttgtttttg 40211091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 801
Target Start/End: Complemental strand, 44019593 - 44019560
Alignment:
Q  768 cttgcatatattatgcattgttcttagcaactga 801  Q
    |||||||||||||||||||||||||| |||||||    
T  44019593 cttgcatatattatgcattgttcttaccaactga 44019560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 760 - 815
Target Start/End: Original strand, 18231482 - 18231537
Alignment:
Q  760 ctccaaatcttgcatatattatgcattgttcttagcaactgaccttagcttacggg 815  Q
    ||||||| ||||||||||||||||||||| |||| ||||||| || |||| |||||    
T  18231482 ctccaaaccttgcatatattatgcattgtccttaccaactgagctaagctcacggg 18231537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 762 - 801
Target Start/End: Complemental strand, 35727487 - 35727448
Alignment:
Q  762 ccaaatcttgcatatattatgcattgttcttagcaactga 801  Q
    ||||| |||||||||||||||||||||||||| |||||||    
T  35727487 ccaaaccttgcatatattatgcattgttcttaccaactga 35727448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 4779022 - 4779060
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  4779022 tctatcgatttgaatgaatgaatatagttttgtttttgt 4779060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 5427700 - 5427662
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  5427700 tctatcgatttgaatgaatgaatatcgttttgtttttgt 5427662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 31193167 - 31193129
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  31193167 tctatcgatttgaatgaatgaatatcgttttgtttttgt 31193129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 31788725 - 31788763
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  31788725 tctatcgatttgaatgaatgaatatcgttttgtttttgt 31788763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 33923974 - 33924012
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  33923974 tctatcgatttgaatgaatgaatatcgttttgtttttgt 33924012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 38445435 - 38445473
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  38445435 tctatcgatttgaatgaatgaatatcgttttgtttttgt 38445473  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 813
Target Start/End: Original strand, 8788307 - 8788356
Alignment:
Q  764 aaatcttgcatatattatgcattgttcttagcaactgaccttagcttacg 813  Q
    ||||||| ||||||||||| ||||||| || |||||||||| ||||||||    
T  8788307 aaatcttacatatattatgtattgttcctatcaactgacctaagcttacg 8788356  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 801
Target Start/End: Original strand, 23250337 - 23250370
Alignment:
Q  768 cttgcatatattatgcattgttcttagcaactga 801  Q
    |||||||||||||||||||||||||| |||||||    
T  23250337 cttgcatatattatgcattgttcttaccaactga 23250370  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 801
Target Start/End: Complemental strand, 32458346 - 32458313
Alignment:
Q  768 cttgcatatattatgcattgttcttagcaactga 801  Q
    |||||||||||||||||||||||||| |||||||    
T  32458346 cttgcatatattatgcattgttcttatcaactga 32458313  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 349 - 388
Target Start/End: Original strand, 5984077 - 5984116
Alignment:
Q  349 ttctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  5984077 ttctatcgatttgaatgaatgaatatcgttttgtttttgt 5984116  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 766 - 801
Target Start/End: Original strand, 25365011 - 25365046
Alignment:
Q  766 atcttgcatatattatgcattgttcttagcaactga 801  Q
    |||||||||||||||||||||||||||| |||||||    
T  25365011 atcttgcatatattatgcattgttcttaccaactga 25365046  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 11462312 - 11462274
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  11462312 tctatcgatttgaatgaatgaatatcgttttgtttttgt 11462274  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 21687640 - 21687678
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  21687640 tctatcgatttgaatgaatgaatatcgttttgtttttgt 21687678  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 34878108 - 34878070
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  34878108 tctatcgatttgaatgaatgaatatcgttttgtttttgt 34878070  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 36894238 - 36894200
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  36894238 tctatcgatttgaatgaatgaatatcgttttgtttttgt 36894200  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 49504425 - 49504387
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  49504425 tctatcgatttgaatgaatgaatatcgttttgtttttgt 49504387  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 762 - 799
Target Start/End: Original strand, 19533189 - 19533226
Alignment:
Q  762 ccaaatcttgcatatattatgcattgttcttagcaact 799  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  19533189 ccaaatcttgcatatattatgcattgtccttatcaact 19533226  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 801
Target Start/End: Original strand, 27023672 - 27023705
Alignment:
Q  768 cttgcatatattatgcattgttcttagcaactga 801  Q
    |||||||||||||||||||||||||| |||||||    
T  27023672 cttgcatatattatgcattgttcttaccaactga 27023705  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 801
Target Start/End: Complemental strand, 30795745 - 30795712
Alignment:
Q  768 cttgcatatattatgcattgttcttagcaactga 801  Q
    |||||||||||||||||||||||||| |||||||    
T  30795745 cttgcatatattatgcattgttcttaccaactga 30795712  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 801
Target Start/End: Original strand, 41711727 - 41711760
Alignment:
Q  768 cttgcatatattatgcattgttcttagcaactga 801  Q
    |||||||||||||||||||||||||| |||||||    
T  41711727 cttgcatatattatgcattgttcttatcaactga 41711760  T

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Target: scaffold0136 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 9872 - 9834
Alignment:
Q  350 tctatcgatttgaatgaatgaatattgtttagtttttgt 388  Q
    |||||||||||||||||||||||||||||| || |||||    
T  9872 tctatcgatttgaatgaatgaatattgttttgtctttgt 9834  T

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Target: scaffold0026 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 809
Target Start/End: Complemental strand, 75369 - 75328
Alignment:
Q  768 cttgcatatattatgcattgttcttagcaactgaccttagct 809  Q
    ||||||||||||||||||||| |||| ||||||| |||||||    
T  75369 cttgcatatattatgcattgtccttaccaactgagcttagct 75328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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