View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4965-Insertion-4 (Length: 792)

Name: NF4965-Insertion-4
Description: NF4965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4965-Insertion-4
NF4965-Insertion-4
[»] chr4 (6 HSPs)
chr4 (8-792)||(38702081-38702868)
chr4 (95-157)||(6891451-6891513)
chr4 (148-210)||(22522992-22523054)
chr4 (116-162)||(27735831-27735877)
chr4 (116-157)||(37711234-37711275)
chr4 (89-162)||(47433794-47433866)
[»] chr2 (2 HSPs)
chr2 (318-474)||(6479741-6479897)
chr2 (95-162)||(41778859-41778926)
[»] chr7 (7 HSPs)
chr7 (103-215)||(21044906-21045018)
chr7 (95-215)||(21058944-21059065)
chr7 (116-162)||(18063673-18063719)
chr7 (116-170)||(19261951-19262005)
chr7 (120-206)||(41100361-41100447)
chr7 (115-156)||(20393693-20393734)
chr7 (116-157)||(33655220-33655261)
[»] chr3 (1 HSPs)
chr3 (116-169)||(37237001-37237054)
[»] chr5 (4 HSPs)
chr5 (116-162)||(4373678-4373724)
chr5 (120-218)||(42273366-42273464)
chr5 (116-157)||(16938570-16938611)
chr5 (126-207)||(14874079-14874158)
[»] chr6 (3 HSPs)
chr6 (116-157)||(13583810-13583851)
chr6 (116-157)||(1395727-1395768)
chr6 (88-157)||(2892687-2892756)
[»] chr1 (1 HSPs)
chr1 (124-171)||(42742430-42742477)
[»] chr8 (2 HSPs)
chr8 (120-162)||(4689920-4689962)
chr8 (159-220)||(18585607-18585668)


Alignment Details
Target: chr4 (Bit Score: 657; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 8 - 792
Target Start/End: Complemental strand, 38702868 - 38702081
Alignment:
Q  8 ataagttcttttgaagtatgtttggattgagggttttggagtgataagtctannnnnnnnnnnnnnnn---aatatgtttggcattttttaaaaattaaa 104  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||                   |||||||||||||||||||||||||||||    
T  38702868 ataagttcttttcaagtatgtttggattgagggttttggagtgataagtctatttttttttttttttttttaatatgtttggcattttttaaaaattaaa 38702769  T
Q  105 agaatgatactataaatgatcatatagcatttcaatcacacttaatttattttcaaaagcattttatggctttcttagtgtagataagaaaaataagccc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  38702768 agaatgatactataaatgatcatatagcatttcaatcacacttaatttattttcaaaagcattttatagctttcttagtgtagataagaaaaataagtcc 38702669  T
Q  205 tcccctccaaaatcctctgtccaaacatccctgttactttgcttacattttggttgacaggttcgcagatcttggtcagcttgatgcttcagagagagct 304  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38702668 tcccctccaaaatcctccgtccaaacatccctgttactttgcttacattttggttgacaggttcgcagatcttggtcagcttgatgcttcagagagagct 38702569  T
Q  305 tccttctgaaccattttcattagtagccgaggaggtgaaattttaactgttacagatttcttggacatgcagaatcttatttcttttcttaaaatcccgt 404  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38702568 tccttctgaaccattttcattagtagctgaggaggtgaaattttaactgttacagatttcttggacatgcagaatcttatttcttttcttaaaatcccgt 38702469  T
Q  405 gtttaaactctattaggattcaggggatcttcgtaaggaaagtggccaagatacattgaagcgcattacagatcttgtcaatgatactcttgttaatgaa 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38702468 gtttaaactctattaggattcaggggatcttcgtaaggaaagtggccaagatacattgaagcgcattacagatcttgtcaatgatactcttgttaatgaa 38702369  T
Q  505 ggatcacataacatttctgttttaacaacagatgacgtgcttaatgccattgataatggtaagtccgaaggtggttccgttggtcggcactgggttttga 604  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||     
T  38702368 ggatcacataacatttctgctttaacaacagatgacgtgcttaatgccattgataatggtaagtccgaaggtggttccattgggcggcactgggttttgg 38702269  T
Q  605 gtccgatagatggtactaaagggtatgtttctttctttaaacaatnnnnnnncattgcgctgactgaaaatcattatgcttagtcactgagtagctcttg 704  Q
     ||||||||||||||||||||||||||||||||||||||||||||       |||||| |||||||||||||||||||||||||||||||||||||||||    
T  38702268 atccgatagatggtactaaagggtatgtttctttctttaaacaataaaaaaacattgcactgactgaaaatcattatgcttagtcactgagtagctcttg 38702169  T
Q  705 cttgtctgatgccattatagttttgtaagaggagaccaatatgccatagcattagctctgctagatgaagggaaagttgtattgggtg 792  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38702168 cgtgtctgatgccattatagttttgtaagaggagaccaatatgccatagcattagctctgctagatgaagggaaagttgtattgggtg 38702081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 6891513 - 6891451
Alignment:
Q  95 aaaaattaaaagaatgatactataaatgatcatatagcatttcaatcacacttaatttatttt 157  Q
    ||||||||||| ||| | | |||||| |||||||||  | |||||||||||||||||||||||    
T  6891513 aaaaattaaaataataacattataaacgatcatataatacttcaatcacacttaatttatttt 6891451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 22523054 - 22522992
Alignment:
Q  148 aatttattttcaaaagcattttatggctttcttagtgtagataagaaaaataagccctcccct 210  Q
    |||| ||||| |||||||  |||| ||||||||| | |||| |||||||||||||||||||||    
T  22523054 aattcatttttaaaagcaaattatagctttcttaatttagaaaagaaaaataagccctcccct 22522992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 27735877 - 27735831
Alignment:
Q  116 ataaatgatcatatagcatttcaatcacacttaatttattttcaaaa 162  Q
    |||||||||||||||  | ||||||||||||||||||||||| ||||    
T  27735877 ataaatgatcatataatacttcaatcacacttaatttattttaaaaa 27735831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 37711275 - 37711234
Alignment:
Q  116 ataaatgatcatatagcatttcaatcacacttaatttatttt 157  Q
    |||||||||||||||  | |||||||||||||||||||||||    
T  37711275 ataaatgatcatataatacttcaatcacacttaatttatttt 37711234  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 47433794 - 47433866
Alignment:
Q  89 ttttttaaaaattaaaagaatgatactataaatgatcatatagcatttcaatcacacttaatttattttcaaaa 162  Q
    ||||| ||||||||||| ||| | | |||||| |||||||||  | ||||||||||||||||||||||| ||||    
T  47433794 tttttaaaaaattaaaataataaca-tataaacgatcatataatacttcaatcacacttaatttattttaaaaa 47433866  T

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Target: chr2 (Bit Score: 73; Significance: 6e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 318 - 474
Target Start/End: Original strand, 6479741 - 6479897
Alignment:
Q  318 ttttcattagtagccgaggaggtgaaattttaactgttacagatttcttggacatgcagaatcttatttcttttcttaaaatcccgtgtttaaactctat 417  Q
    |||||||||| ||  || ||||||||||||||| | ||||| |||||||||| || || |||||||||||||||||||||||||  ||||||| ||||||    
T  6479741 ttttcattagcagttgatgaggtgaaattttaaatcttacacatttcttggatatacaaaatcttatttcttttcttaaaatccaatgtttaagctctat 6479840  T
Q  418 taggattcaggggatcttcgtaaggaaagtggccaagatacattgaagcgcattaca 474  Q
    || |||||| ||||||| || ||| ||| ||||||||||| |||||||||| |||||    
T  6479841 tatgattcatgggatctccgcaagcaaattggccaagatatattgaagcgcgttaca 6479897  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 41778926 - 41778859
Alignment:
Q  95 aaaaattaaaagaatgatactataaatgatcatatagcatttcaatcacacttaatttattttcaaaa 162  Q
    ||||||| ||| || || || |||||||||||||||  | ||||||||||||||||||||||| ||||    
T  41778926 aaaaattgaaacaacgaaacgataaatgatcatataatacttcaatcacacttaatttattttaaaaa 41778859  T

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Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 103 - 215
Target Start/End: Original strand, 21044906 - 21045018
Alignment:
Q  103 aaagaatgatactataaatgatcatatagcatttcaatcacacttaatttattttcaaaagcattttatggctttcttagtgtagataagaaaaataagc 202  Q
    ||||||| |||  ||| ||||||||||| ||||| |||||||||||||||||||| |||| || ||||| |||| ||||   |||| ||||| ||||||     
T  21044906 aaagaataatatcatagatgatcatataacattttaatcacacttaatttatttttaaaaacaatttatagcttccttaagctagaaaagaataataagt 21045005  T
Q  203 cctcccctccaaa 215  Q
    |||||||||||||    
T  21045006 cctcccctccaaa 21045018  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 21058944 - 21059065
Alignment:
Q  95 aaaaattaaaagaatgatactataaatgatcatatagcatttcaatcacacttaatttattttcaaaagcat-tttatggctttcttagtgtagataaga 193  Q
    ||||||| | ||||| |||  ||| |||||||| || |||||||||||||||||||||||||| ||||  || ||||| |||| ||||   |||| ||||    
T  21058944 aaaaatttacagaataatatgatacatgatcatttaacatttcaatcacacttaatttatttttaaaaagatatttatagcttccttaagctagaaaaga 21059043  T
Q  194 aaaataagccctcccctccaaa 215  Q
    |||| ||| |||||||||||||    
T  21059044 aaaacaagtcctcccctccaaa 21059065  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 18063673 - 18063719
Alignment:
Q  116 ataaatgatcatatagcatttcaatcacacttaatttattttcaaaa 162  Q
    |||||||||||||||  | ||||||||||||||||||||||| ||||    
T  18063673 ataaatgatcatataatacttcaatcacacttaatttattttaaaaa 18063719  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 19261951 - 19262005
Alignment:
Q  116 ataaatgatcatatagcatttcaatcacacttaatttattttcaaaagcatttta 170  Q
    |||||||||||||||| | |||||||||| ||||||||||||  ||| |||||||    
T  19261951 ataaatgatcatatagtacttcaatcacaattaatttatttttcaaaacatttta 19262005  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 206
Target Start/End: Original strand, 41100361 - 41100447
Alignment:
Q  120 atgatcatatagcatttcaatcacacttaatttattttcaaaagcattttatggctttcttagtgtagataagaaaaataagccctc 206  Q
    ||||||||| | || ||||||||||||| ||| ||||| | || |||||||| |||| |||| | |||| |||||||| ||||||||    
T  41100361 atgatcatagaacaattcaatcacacttcattcatttttagaaacattttatagcttgcttaatttagaaaagaaaaacaagccctc 41100447  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 20393734 - 20393693
Alignment:
Q  115 tataaatgatcatatagcatttcaatcacacttaatttattt 156  Q
    ||||||||||||||||  | ||||||||||||||||||||||    
T  20393734 tataaatgatcatataatacttcaatcacacttaatttattt 20393693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 33655220 - 33655261
Alignment:
Q  116 ataaatgatcatatagcatttcaatcacacttaatttatttt 157  Q
    |||||||||||||||  | |||||||||||||||||||||||    
T  33655220 ataaatgatcatataatacttcaatcacacttaatttatttt 33655261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 37237054 - 37237001
Alignment:
Q  116 ataaatgatcatatagcatttcaatcacacttaatttattttcaaaagcatttt 169  Q
    |||||||||||| ||| | |||||||||||||||||||||||||||| ||||||    
T  37237054 ataaatgatcatttagtacttcaatcacacttaatttattttcaaaaacatttt 37237001  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 4373678 - 4373724
Alignment:
Q  116 ataaatgatcatatagcatttcaatcacacttaatttattttcaaaa 162  Q
    |||||||||||||||  ||||||||||||||||||||||||| ||||    
T  4373678 ataaatgatcatataatatttcaatcacacttaatttatttttaaaa 4373724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 42273464 - 42273366
Alignment:
Q  120 atgatcatatagcatttcaatcacacttaatttattttcaaaagcattttatggctttcttagtgtagataagaaaaataagccctcccctccaaaatc 218  Q
    ||||||||||| || ||||||||||||| ||| ||||| | || |||||| | |||| |||| | |||| |||||||| ||||||| | ||||||||||    
T  42273464 atgatcatataacaattcaatcacacttcattcatttttagaaacattttgtagcttgcttaatttagaaaagaaaaacaagcccttctctccaaaatc 42273366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 16938611 - 16938570
Alignment:
Q  116 ataaatgatcatatagcatttcaatcacacttaatttatttt 157  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  16938611 ataaatgatcatataatatttcaatcacacttaatttatttt 16938570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 14874158 - 14874079
Alignment:
Q  126 atatagcatttcaatcacacttaatttattttcaaaagcattttatggctttcttagtgtagataagaaaaataagccctcc 207  Q
    ||||| |||||||||||||||||| |  |||| |||| |||||||| |||| |||| | |||| ||||||| ||||||||||    
T  14874158 atataacatttcaatcacacttaact--ttttaaaaaacattttatagcttccttaatttagaaaagaaaagtaagccctcc 14874079  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 13583851 - 13583810
Alignment:
Q  116 ataaatgatcatatagcatttcaatcacacttaatttatttt 157  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  13583851 ataaatgatcatataatatttcaatcacacttaatttatttt 13583810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 1395768 - 1395727
Alignment:
Q  116 ataaatgatcatatagcatttcaatcacacttaatttatttt 157  Q
    |||||||||||| ||  |||||||||||||||||||||||||    
T  1395768 ataaatgatcatgtattatttcaatcacacttaatttatttt 1395727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 2892687 - 2892756
Alignment:
Q  88 attttttaaaaattaaaagaatgatactataaatgatcatatagcatttcaatcacacttaatttatttt 157  Q
    |||||||||||||||||| ||| | |  |||||  ||||||||  |||||||||||||| ||||||||||    
T  2892687 attttttaaaaattaaaataataacatgataaacaatcatataatatttcaatcacactaaatttatttt 2892756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 42742430 - 42742477
Alignment:
Q  124 tcatatagcatttcaatcacacttaatttattttcaaaagcattttat 171  Q
    |||||||| | ||||||||||||||||||||||| |||| ||||||||    
T  42742430 tcatatagtacttcaatcacacttaatttattttaaaaaacattttat 42742477  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 4689962 - 4689920
Alignment:
Q  120 atgatcatatagcatttcaatcacacttaatttattttcaaaa 162  Q
    ||||||||||| |||||||||||||||| ||||||||| ||||    
T  4689962 atgatcatataacatttcaatcacacttgatttatttttaaaa 4689920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 18585607 - 18585668
Alignment:
Q  159 aaaagcattttatggctttcttagtgtagataagaaaaataagccctcccctccaaaatcct 220  Q
    |||||||||||||  |||  ||| | |||| |||||||||||||||| ||||||||||||||    
T  18585607 aaaagcattttataacttctttaatttagaaaagaaaaataagcccttccctccaaaatcct 18585668  T

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