View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4965-Insertion-5 (Length: 768)
Name: NF4965-Insertion-5
Description: NF4965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4965-Insertion-5 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 710; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 8 - 768
Target Start/End: Original strand, 24990253 - 24991013
Alignment:
| Q |
8 |
gttttcacaatcacctttgatcttattcaatacctaataatatatgaaccaaaaacaaattcataagaatcttggtaagaccctgattttatattgaact |
107 |
Q |
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| T |
24990253 |
gttttcacaatcacctttgatcttattcaatacctaataatatatgaaccaaaaacaaattcataagaatcttggtaagaccctgattttatattgaact |
24990352 |
T |
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| Q |
108 |
tgggctaggttgcagaaggggcacgagcaagaggtgcatcaaaaataataggtgtggatattaacccagacaaattcaataacacaggtagcttcaaaca |
207 |
Q |
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| T |
24990353 |
tgggctaggttgcagaaggggcacgagcaagaggtgcatcaaaaataataggtgtggatattaacccagacaaattcaataacacaggtagcttcaaaca |
24990452 |
T |
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| Q |
208 |
ctttttaatttgatttcaagagttaggacttcataatttgcctaagacttgaacataaatgtatcttctttgtgctcaaagccgaaacaatgggaatcac |
307 |
Q |
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| T |
24990453 |
ctttttaatttgatttcaagagttaggacttcataatttgcctaagacttgaacataaatgtatcttctttgtgctcaaagccgaaacaatgggaatcac |
24990552 |
T |
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| Q |
308 |
agaattcataaatccaaaggatgaagaaaagccggtatacgaggtttgtgttttctctctactcatttcacaaaagaaaatatcatctactcgtgcattt |
407 |
Q |
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| T |
24990553 |
agaattcataaatccaaaggatgaagaaaagccagtatacgaggtttgtgttttctctctactcatttcacaaaagaaaatatcatctactcgtgcattt |
24990652 |
T |
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| Q |
408 |
tcgccagcaaagtgacaaattcatttgcagataatcagagaaatgactgatggaggtgtagactgtagttttgaatgtaccggaaatttgaacgttctaa |
507 |
Q |
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| T |
24990653 |
tcgccggcaaagtgacaaattcatttgcagataatcagagaaatgactgatggaggtgtagactatagttttgaatgtaccggaaatttgaacgttctaa |
24990752 |
T |
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| Q |
508 |
gagatagcttcttatctgttcatgaggtatatttatattcatacagtaacaaaaaattaccagtaatttcgttggcatagttttatatttttctttgaaa |
607 |
Q |
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| T |
24990753 |
gagatagcttcttatctgttcatgaggtatatttatattcatatagtagcaaaaaattaccagtaattttgttggcatagttttatatttttctttgaaa |
24990852 |
T |
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| Q |
608 |
actcggtatttggtcaaagaataaagctaatccggaccaccaaaaatatcttatcaaaccnnnnnnnnnttactagttaaaaattgtgcactatcaaatt |
707 |
Q |
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| T |
24990853 |
actcggtatttggtcaaagaataaagctaatccggaccaccaaaaatatcttatcaaaccaaaaaacaattactagttaaaaattgtgcactatcaaatt |
24990952 |
T |
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| Q |
708 |
tcatgtaaaattttgtataatgtagggttggggattgactgtactattgggaattcatgga |
768 |
Q |
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| T |
24990953 |
tcatgtaaaattttgtataatgtagggttggggattgactgtactattgggaattcatgga |
24991013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 25 - 183
Target Start/End: Original strand, 24993959 - 24994113
Alignment:
| Q |
25 |
tgatcttattcaatacctaataatatatgaaccaaaaacaaattcataagaatcttggtaagaccctgattttatattgaacttgggctaggttgcagaa |
124 |
Q |
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| T |
24993959 |
tgatcttcttcaatacctagta---tatgaaccaaaa-caaatttataaaattcttggtaagaccctgaatttatattgaactttggccaggttgcacta |
24994054 |
T |
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| Q |
125 |
ggggcacgagcaagaggtgcatcaaaaataataggtgtggatattaacccagacaaatt |
183 |
Q |
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| T |
24994055 |
ggggcgcaagccagaggtgcttcaaaaataataggtgtggatgtcaacccagagaaatt |
24994113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 264 - 540
Target Start/End: Original strand, 24994312 - 24994571
Alignment:
| Q |
264 |
aaatgtatcttctttgtgctcaaagccgaaacaatgggaatcacagaattcataaatccaaaggatgaagaaaagccggtatacgaggtttgtgttttct |
363 |
Q |
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| T |
24994312 |
aaatgtattttctttgtactca--gccaaagcaatgggaatcacagacttcataaatccaagggatgaagagaagcctgtggttgaggttggtgttttct |
24994409 |
T |
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| Q |
364 |
ctctactcatttcacaaaagaaaatatcatctactcgtgcattttcgccagcaaagtgacaaattcatttgcagataatcagagaaatgactgatggagg |
463 |
Q |
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| T |
24994410 |
ctcctcgcatttcacaaaagaatacatcatttgcacatgca---------------tgataaagtcatttgcagaaaatcagagaaatgactggaggagg |
24994494 |
T |
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| Q |
464 |
tgtagactgtagttttgaatgtaccggaaatttgaacgttctaagagatagcttcttatctgttcatgaggtatatt |
540 |
Q |
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| T |
24994495 |
tgtacactacagttttgaatgcacaggaaatgtgaacgttttaagggattccttcttgtcctgtcatgaggtatatt |
24994571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 687 - 766
Target Start/End: Original strand, 24994607 - 24994684
Alignment:
| Q |
687 |
aaaattgtgcactatcaaatttcatgtaaaattttgtataatgtagggttggggattgactgtactattgggaattcatg |
766 |
Q |
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| T |
24994607 |
aaaactgtgcactatcaaattttatgtctaatt--gtataatgtagggttggggattgactatactattgggaattcatg |
24994684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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