View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4965-Insertion-7 (Length: 589)
Name: NF4965-Insertion-7
Description: NF4965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4965-Insertion-7 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 497; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 7 - 589
Target Start/End: Original strand, 2602503 - 2603083
Alignment:
| Q |
7 |
atatatgacaagttgtgattgagatattttgcaagttgtttccaattccagcacattactaggttgttaacatgaattattgaaactaaaataagcaatt |
106 |
Q |
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| T |
2602503 |
atatatgacaagttgtgattgagatattttgcaagttgtttccaattccagcacattactaggttgttaacatgaattattgaaactaaaataagcaatt |
2602602 |
T |
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| Q |
107 |
ttgtgagcaacatatgcacaagcacacataaccctacaatttctttgtcgacaaggttccgattgcagcaactatatggcaaggtgagcatcatttagag |
206 |
Q |
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| T |
2602603 |
ttgtgagtaacatatgcacaagcacacata-ccctacaatttctttgtcgacaaggttccgattgcagcaactatatggcaaggtgagcatcatttagag |
2602701 |
T |
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| Q |
207 |
ggtgacagatctaagagtcaatgtaaatatgattattaaaacaaaatcataaggtcggcagacaactcagtttgtgagttgaggtctgaggaaaaccgaa |
306 |
Q |
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| T |
2602702 |
ggtgacagatctaagagtcaatgtaaatatgattattaaaacaaaatcataaggtcggcagacaactcagtttgtgagttgaggtctgaggaaaaccgaa |
2602801 |
T |
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| Q |
307 |
agagctggtttagggttaaactttattgacttaacataactcgccaaattaatgtattaatatttgtatccaaacacaaacnnnnnnntatacttggttt |
406 |
Q |
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| T |
2602802 |
agagctggtttagggttaaattttattgacttaacataactcgccaaattaatgtattaatatttgtatccatacacaaacaaaaaaatatacttggttt |
2602901 |
T |
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| Q |
407 |
ccttctattctaacctagtagtaataatttacattgaatgtatttcgtttccttgcacaagctaagtaagagcatttattttatcaagagaaagaagcaa |
506 |
Q |
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| T |
2602902 |
ccttctattccaacctattagtaataatttacattgaatgtatttcgtttccttgcacaag-----taagagcatttattttatcaagaaaaagaagcaa |
2602996 |
T |
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| Q |
507 |
aaacattttggatattattattccctcatgtttaaacagacatttacctcatccgtcccaaaaccaca----caggactgacaggag |
589 |
Q |
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| T |
2602997 |
aaacattttggatattattattccctcatgtttaaacagacatttacctcatccgtcccaaaaccacacacacaggactgacaggag |
2603083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 2581063 - 2581266
Alignment:
| Q |
12 |
tgacaagttgtgattgagatattttgcaagttgtttccaattccagcacattactaggttgttaacatgaattattgaaactaaaataagcaattttgtg |
111 |
Q |
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|||||| || |||||| |||||||||||||||||||||||| ||| |||| ||||||| |||||||||||| |||||| ||| |||||||||||||| |
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| T |
2581063 |
tgacaatttatgattggaatattttgcaagttgtttccaatttcagaccattgctaggtttttaacatgaattgttgaaatcaaagtaagcaattttgtg |
2581162 |
T |
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| Q |
112 |
agcaacatatgc-acaagcacacataaccctacaatttctttgtcgacaaggttccgattgcagcaactatatggcaaggtgagcatcatttagagggtg |
210 |
Q |
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| T |
2581163 |
agtgagccatgcaaaaagcacacat--gcgtacaaattttgtgtcggcaaggttccgattgcagcgactatatggcaaggtcagcatcctttggagggtg |
2581260 |
T |
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| Q |
211 |
acagat |
216 |
Q |
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| T |
2581261 |
acagat |
2581266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 2595811 - 2596014
Alignment:
| Q |
12 |
tgacaagttgtgattgagatattttgcaagttgtttccaattccagcacattactaggttgttaacatgaattattgaaactaaaataagcaattttgtg |
111 |
Q |
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|||||| || |||||| |||||||||||||||||||||||| ||| |||| ||||||| |||||||||||| |||||| ||| |||||||||||||| |
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| T |
2595811 |
tgacaatttatgattggaatattttgcaagttgtttccaatttcagaccattgctaggtttttaacatgaattgttgaaatcaaagtaagcaattttgtg |
2595910 |
T |
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| Q |
112 |
agcaacatatgc-acaagcacacataaccctacaatttctttgtcgacaaggttccgattgcagcaactatatggcaaggtgagcatcatttagagggtg |
210 |
Q |
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| T |
2595911 |
agtgagccatgcaaaaagcacacat--gcgtacaaattttgtgtcggcaaggttccgattgcagcgactatatggcaaggtcagcatcctttggagggtg |
2596008 |
T |
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| Q |
211 |
acagat |
216 |
Q |
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|||||| |
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| T |
2596009 |
acagat |
2596014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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