View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4965-Insertion-9 (Length: 501)

Name: NF4965-Insertion-9
Description: NF4965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4965-Insertion-9
NF4965-Insertion-9
[»] chr5 (1 HSPs)
chr5 (8-501)||(34387801-34388294)


Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 8 - 501
Target Start/End: Original strand, 34387801 - 34388294
Alignment:
Q  8 attttaatgccggtaaatgttgttgattatgtccctcgtttccactacgattagcttcaacatgagaaagttgttccatcaccctttcaaatccagaccc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34387801 attttaatgccggtaaatgttgttgattatgtccctcgtttccactacgattagcttcaacatgagaaagttgttccatcaccctttcaaatccagaccc 34387900  T
Q  108 tagaataaactctgacatccttggaggtaatgctctaagaccagaaccggcaccatcttcgtagaaaagctcaaactcgttattctcttcacgctcacgg 207  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34387901 tagaataagctctgacatccttggaggtaatgctctaagaccagaaccggcaccatcttcgtagaaaagctcaaactcgttattctcttcacgctcacgg 34388000  T
Q  208 ctcgtcccctcagaggaaccaccaccaccacgaatcatgataatcgggttaaacggagaaatgtctccaccgttaacattgtttctacggcggcgtcgaa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34388001 ctcgtcccctcagaggaaccaccaccaccacgaatcatgataatcgggttaaacggagaaatgtctccaccgttaacattgtttctacggtggcgtcgaa 34388100  T
Q  308 aagtattttgattataattgttattgcgatggcctatcatgtacatagccgccgccatagggaacctcattcgacggccaccaacagtattggcggaatg 407  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34388101 aagtattttgattataattattattgcgatggcctatcatgtacatagccgccgccatagggaacctcattcgacggccaccaacagtattggcggaatg 34388200  T
Q  408 tgttgattgttcgacatcttccagaaagccgctgtcacaatcgggacatattggcatccctagcctccataccctaacaaatttgttgcaccta 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34388201 tgttgattgttcgacatcttccagaaagccgctgtcacaatcgggacatattggcatccctagcctccataccctaacaaatttgttgcaccta 34388294  T

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