View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4965_high_20 (Length: 266)
Name: NF4965_high_20
Description: NF4965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4965_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 54220554 - 54220305
Alignment:
| Q |
1 |
agatcatggttggtgcaatctcttcaacagatgtgcaaagacataatgcgggtaacatgaatgatatgattagtgacttacctgaggacgttcttcttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54220554 |
agatcatggttggtgcaatctcttcaacagatgtgcaaagacataatgcgggtaacatgaatgatatgattagtgacttacctgaggacgttcttcttga |
54220455 |
T |
|
| Q |
101 |
tattctttctttagtccctaccaaagatgctgtaaaaacctccatattagcgaaaaagtggaaacacttgtggactcgatcacttactcttctttgattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54220454 |
tattctttctttagtccctaccaaagatgctgtaaaaacctccatattagtgaaaaagtggaaacacttgtggactcgatcacttactcttctttgattt |
54220355 |
T |
|
| Q |
201 |
tcaaattcctcatttttgtgatgggttacaccaccaaaatttgaagttag |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54220354 |
tcaaattcctcatttttgtgatgggttacaccaccaaaatttgaagttag |
54220305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 31239973 - 31239859
Alignment:
| Q |
61 |
atgatatgattagtgacttacctgaggacgttcttcttgatattctttctttagtccctaccaaagatgctgtaaaaacctccatattagcgaaaaagtg |
160 |
Q |
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| T |
31239973 |
atgatatcattagcaacttacccgagggcgttcttcttcatattctttcattgctccctacgaaagatgctgtaagaacttccatattggctaagaagtg |
31239874 |
T |
|
| Q |
161 |
gaaacacttgtggac |
175 |
Q |
| |
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|||||| |||||||| |
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| T |
31239873 |
gaaacaattgtggac |
31239859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 31256470 - 31256356
Alignment:
| Q |
61 |
atgatatgattagtgacttacctgaggacgttcttcttgatattctttctttagtccctaccaaagatgctgtaaaaacctccatattagcgaaaaagtg |
160 |
Q |
| |
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||||||| ||||| ||||||| |||| |||||||||| |||||||||| || ||||||| ||||||||||||| ||| |||||||| || || ||||| |
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| T |
31256470 |
atgatatcattagcaacttacccgagggcgttcttcttcatattctttcattgctccctacgaaagatgctgtaagaacttccatattggctaagaagtg |
31256371 |
T |
|
| Q |
161 |
gaaacacttgtggac |
175 |
Q |
| |
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|||||| |||||||| |
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| T |
31256370 |
gaaacaattgtggac |
31256356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 162
Target Start/End: Complemental strand, 31274887 - 31274780
Alignment:
| Q |
55 |
acatgaatgatatgattagtgacttacctgaggacgttcttcttgatattctttctttagtccctaccaaagatgctgtaaaaacctccatattagcgaa |
154 |
Q |
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||||||| ||||| |||||||| |||||||||| ||||||||| |||||||||||||| | |||| | |||||| ||||| ||| ||| | ||||| || |
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| T |
31274887 |
acatgaacgatataattagtgatttacctgagggtgttcttcttcatattctttctttactacctatcgaagatgttgtaagaacttccgtgttagcaaa |
31274788 |
T |
|
| Q |
155 |
aaagtgga |
162 |
Q |
| |
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||||||| |
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| T |
31274787 |
gaagtgga |
31274780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 63 - 175
Target Start/End: Original strand, 16130579 - 16130691
Alignment:
| Q |
63 |
gatatgattagtgacttacctgaggacgttcttcttgatattctttctttagtccctaccaaagatgctgtaaaaacctccatattagcgaaaaagtgga |
162 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||| |||| |||||||||| ||||| ||| |||||| |||| || ||||||| |
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| T |
16130579 |
gatatgattagtgacttacctgaggccgttcttcttcatattctttctttactcccgaccaaagatgttgtaagaacttccatactagcaaagaagtgga |
16130678 |
T |
|
| Q |
163 |
aacacttgtggac |
175 |
Q |
| |
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| ||||||||||| |
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| T |
16130679 |
agcacttgtggac |
16130691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 63 - 175
Target Start/End: Original strand, 17593989 - 17594101
Alignment:
| Q |
63 |
gatatgattagtgacttacctgaggacgttcttcttgatattctttctttagtccctaccaaagatgctgtaaaaacctccatattagcgaaaaagtgga |
162 |
Q |
| |
|
|||||||||||||| ||||| |||| ||||||||| |||||||||||||| ||||||| ||||||||||||| ||| ||||||||||| | |||||||| |
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| T |
17593989 |
gatatgattagtgaattacccgaggctgttcttcttcatattctttctttactccctactaaagatgctgtaagaacttccatattagctacaaagtgga |
17594088 |
T |
|
| Q |
163 |
aacacttgtggac |
175 |
Q |
| |
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|| |||||||||| |
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| T |
17594089 |
aatacttgtggac |
17594101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 9891847 - 9891799
Alignment:
| Q |
103 |
ttctttctttagtccctaccaaagatgctgtaaaaacctccatattagc |
151 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||| ||||||||||| |
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|
| T |
9891847 |
ttctttcgttactccctaccaaagatgctgtaagaacttccatattagc |
9891799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 63 - 175
Target Start/End: Complemental strand, 14729498 - 14729386
Alignment:
| Q |
63 |
gatatgattagtgacttacctgaggacgttcttcttgatattctttctttagtccctaccaaagatgctgtaaaaacctccatattagcgaaaaagtgga |
162 |
Q |
| |
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|||||||| ||||| ||||| |||| ||||||||| |||||||||||||| ||||||| ||||||||||||| ||| ||||||||||| | |||||||| |
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| T |
14729498 |
gatatgataagtgaattacccgaggctgttcttcttcatattctttctttactccctactaaagatgctgtaagaacttccatattagctacaaagtgga |
14729399 |
T |
|
| Q |
163 |
aacacttgtggac |
175 |
Q |
| |
|
|| |||||||||| |
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|
| T |
14729398 |
aatacttgtggac |
14729386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 1095059 - 1095107
Alignment:
| Q |
103 |
ttctttctttagtccctaccaaagatgctgtaaaaacctccatattagc |
151 |
Q |
| |
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||||||| ||| ||||||||||||||||||||| ||| ||||||||||| |
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| T |
1095059 |
ttctttcgttactccctaccaaagatgctgtaagaacttccatattagc |
1095107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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