View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4965_high_22 (Length: 245)
Name: NF4965_high_22
Description: NF4965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4965_high_22 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 34789159 - 34788932
Alignment:
| Q |
1 |
atgttgcacagaaacatatatcttacattcaagtcatgcactatccactattctatctatcaaactgttgatacagtggtcaacagaccttaataacatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34789159 |
atgttgcacagaaacatatatcttacattcaagtcatgcactatccactattctatctatcaaactgttgatacagtggtcaacagaccttaataacatg |
34789060 |
T |
|
| Q |
101 |
caatttctttagaaaattaattactaatatgtgtggaacgaagctctacagagacggcaactcggatgagcgctaagccacatatcaagcactcagaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34789059 |
caatttctttagaaaattaattactaatatgtgtggaacgaagctctacagagacggcaactcggatgagcgctaagccacatatcaagcactcagaatg |
34788960 |
T |
|
| Q |
201 |
ataaacattttgacgttctgttaacacc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
34788959 |
ataaacattttgacgttctgttaacacc |
34788932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 103 - 230
Target Start/End: Original strand, 2289977 - 2290107
Alignment:
| Q |
103 |
atttctttagaaaattaattactaatatgtgtggaacgaagctctacagagacggcaactcggatga---gcgctaagccacatatcaagcactcagaat |
199 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||| ||||| || ||||||| ||||||| |||||| || ||||||||||||||||||||||||||| |
|
|
| T |
2289977 |
atttctttagaaaatttattactaacatgtgtggagcgaagttcaacagagagggcaactaggatgatgagcactaagccacatatcaagcactcagaat |
2290076 |
T |
|
| Q |
200 |
gataaacattttgacgttctgttaacacctt |
230 |
Q |
| |
|
||||||||| |||| ||||||||||||||| |
|
|
| T |
2290077 |
gataaacatgctgacattctgttaacacctt |
2290107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 2289873 - 2289952
Alignment:
| Q |
58 |
tatcaaactgttgatacagtggtcaacagaccttaataacatgc-aatttctttagaaaattaattactaatatgtgtgga |
137 |
Q |
| |
|
|||||||||||||||| | ||||||||| | ||| |||| ||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2289873 |
tatcaaactgttgataga-tggtcaacaaaacttgataatatgttaatttctttagaaaattaattactaacatgtgtgga |
2289952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 2289812 - 2289849
Alignment:
| Q |
36 |
atgcactatccactattctatctatcaaactgttgata |
73 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2289812 |
atgcactatccactattctatccatcaaactgttgata |
2289849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 9564734 - 9564816
Alignment:
| Q |
102 |
aatttctttagaaaattaattactaatatgtgtggaacgaagctctacagagacggcaactcggatgagcgctaagccacata |
184 |
Q |
| |
|
||||||||||||||||| || ||||| |||| |||| ||||||||| |||| | ||||| |||||| | |||||||||||| |
|
|
| T |
9564734 |
aatttctttagaaaatttatgactaacatgtatggagggaagctctatagagcagtcaactaggatgaacactaagccacata |
9564816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University