View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4965_high_23 (Length: 240)
Name: NF4965_high_23
Description: NF4965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4965_high_23 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 46569511 - 46569732
Alignment:
| Q |
18 |
gttactttcgaagcataccccttgttcatttttattcatacaccaagtatttatacagttgtatatgtaccacatcagttaaatactaaattatcaccaa |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46569511 |
gttactttcgaagcatatcccttgttcatttttattcatacaccaagtatttatacagttgtatatgtaccacatcagttaaatactaaattatcaccaa |
46569610 |
T |
|
| Q |
118 |
ctacatttgacatttttctcaattcctnnnnnnntttcaatttcaaaggtttggttagtatgtcatcatgctctagctcgaatttgcaatatggtagttc |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46569611 |
ctacatttgacatttttctcaattcct-aaaaaatttcaatttcaaaggtttggttagtatgtcatcatgctctagctcgaatttgcaatatggtagttc |
46569709 |
T |
|
| Q |
218 |
aaactctccttttattacttaat |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
46569710 |
aaactctccttttattacttaat |
46569732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University