View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4965_high_25 (Length: 221)

Name: NF4965_high_25
Description: NF4965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4965_high_25
NF4965_high_25
[»] chr2 (6 HSPs)
chr2 (9-188)||(33003137-33003315)
chr2 (10-73)||(33003537-33003600)
chr2 (9-69)||(45114607-45114667)
chr2 (14-68)||(15765487-15765541)
chr2 (20-68)||(14217643-14217691)
chr2 (10-54)||(36888689-36888733)
[»] chr5 (4 HSPs)
chr5 (9-184)||(7491501-7491676)
chr5 (9-155)||(29500451-29500597)
chr5 (9-52)||(14278534-14278577)
chr5 (14-52)||(5976790-5976828)
[»] chr4 (2 HSPs)
chr4 (13-168)||(21226259-21226414)
chr4 (13-184)||(21224854-21225023)
[»] chr7 (9 HSPs)
chr7 (10-99)||(3986774-3986863)
chr7 (16-73)||(32390265-32390323)
chr7 (10-55)||(25933071-25933116)
chr7 (13-52)||(41590693-41590732)
chr7 (16-69)||(23256525-23256579)
chr7 (14-52)||(28325449-28325487)
chr7 (14-52)||(41516070-41516108)
chr7 (13-55)||(41590248-41590290)
chr7 (109-184)||(3986854-3986926)
[»] chr3 (3 HSPs)
chr3 (9-99)||(35942583-35942673)
chr3 (110-175)||(16110961-16111026)
chr3 (109-184)||(35942517-35942592)
[»] chr1 (3 HSPs)
chr1 (9-99)||(27585790-27585877)
chr1 (9-152)||(36475707-36475855)
chr1 (16-60)||(787688-787732)
[»] scaffold0169 (1 HSPs)
scaffold0169 (9-68)||(27021-27080)
[»] chr8 (1 HSPs)
chr8 (13-69)||(21190356-21190413)
[»] chr6 (1 HSPs)
chr6 (13-57)||(18749052-18749096)


Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 33003137 - 33003315
Alignment:
Q  9 acatcatcatcatctcattactacacctccaccaccatcaacaacaataacaccacctaagttaaaagctagaaattaaagttgttttctcgtaaaaaga 108  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||     
T  33003137 acatcatcatcatctcattactacatctccaccaccatcaacaacaataacaccacctaagttaat-gctagaaattaaagttgttttctcgtaaaaagc 33003235  T
Q  109 ttgttttctcaaaggcattaaagctgaatgcaagggatatgttcacttataagaacttcacaatttttattgaaagacta 188  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  33003236 ttgttttctcaaagacattaaagctgaatgcaagggatatgttcacttctaagaacttcacaattttcattgaaagacta 33003315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 33003600 - 33003537
Alignment:
Q  10 catcatcatcatctcattactacacctccaccaccatcaacaacaataacaccacctaagttaa 73  Q
    |||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||    
T  33003600 catcatcatcatctcattactatacattcaccaccatcaacaacaataacaccacctaagttaa 33003537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 45114667 - 45114607
Alignment:
Q  9 acatcatcatcatctcattactacacctccaccaccatcaacaacaataacaccacctaag 69  Q
    |||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||    
T  45114667 acatcatcatcatctcatcacttcacctccacaaccatcaacaacaataacaccacctaag 45114607  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 15765541 - 15765487
Alignment:
Q  14 atcatcatctcattactacacctccaccaccatcaacaacaataacaccacctaa 68  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  15765541 atcatcatctcattactatacctccactaccatcaacaacaataacaccacctaa 15765487  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 14217643 - 14217691
Alignment:
Q  20 atctcattactacacctccaccaccatcaacaacaataacaccacctaa 68  Q
    |||| |||| ||| ||||||||| ||||||||| |||||||||||||||    
T  14217643 atctaattattactcctccaccatcatcaacaataataacaccacctaa 14217691  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 36888689 - 36888733
Alignment:
Q  10 catcatcatcatctcattactacacctccaccaccatcaacaaca 54  Q
    |||||||||||  |||| ||||||||||||||||||| |||||||    
T  36888689 catcatcatcacttcatcactacacctccaccaccataaacaaca 36888733  T

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Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 9 - 184
Target Start/End: Original strand, 7491501 - 7491676
Alignment:
Q  9 acatcatcatcatctcattactacacctccaccaccatcaacaacaataacaccacctaagttaaaagctagaaat-taaagttgttttctcgtaaaaag 107  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| || ||||    
T  7491501 acatcatcatcatcttattactacacctccaccaccatcaacagcaataacaccacctaagttaaaagctataaatctaaagttgttttctcatagaaag 7491600  T
Q  108 attgttttctcaaaggcattaaagctgaatgcaagggatatgttcacttataagaacttcacaatttttattgaaag 184  Q
     ||||||||||||||| ||||||||| || |||||||| ||||||||| |||| |||||||||||||| || |||||    
T  7491601 cttgttttctcaaaggtattaaagct-aacgcaagggacatgttcactcataaaaacttcacaattttcatcgaaag 7491676  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 29500597 - 29500451
Alignment:
Q  9 acatcatcatcatctcattactacacctccaccaccatcaacaacaataacaccacctaagttaaaagctagaaat-taaagttgttttctcgtaaaaag 107  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||| |||| || |||| ||||||||||||||| || ||||    
T  29500597 acatcatcatcatctcattactacacatccaccaccatcaacaacaataacacctcccaagtt-aaagttataaatctaaagttgttttctcatagaaag 29500499  T
Q  108 attgttttctcaaaggcattaaagctgaatgcaagggatatgttcact 155  Q
     ||||||||||||| | ||||||| ||||||||||||| |||||||||    
T  29500498 cttgttttctcaaaagtattaaagttgaatgcaagggacatgttcact 29500451  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 14278577 - 14278534
Alignment:
Q  9 acatcatcatcatctcattactacacctccaccaccatcaacaa 52  Q
    |||||||||||||||||||||||||| ||||||| |||||||||    
T  14278577 acatcatcatcatctcattactacacttccaccatcatcaacaa 14278534  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 5976828 - 5976790
Alignment:
Q  14 atcatcatctcattactacacctccaccaccatcaacaa 52  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  5976828 atcatcatctcatcactacacctccaccaccatcaacaa 5976790  T

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Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 13 - 168
Target Start/End: Complemental strand, 21226414 - 21226259
Alignment:
Q  13 catcatcatctcattactacacctccaccaccatcaacaacaataacaccacctaagttaaaagctagaaa-ttaaagttgttttctcgtaaaaagattg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||  ||  ||| |||    
T  21226414 catcatcatctcattactacacctccaccaccatcaacaacaataacaccacctaagtt-aaagctataaatttaaagttgttttctaataggaagcttg 21226316  T
Q  112 ttttctcaaaggcattaaagctgaatgcaagggatatgttcacttataagaacttca 168  Q
    |||||||||||| ||||||||||||||||||||| ||||||||| ||||||| ||||    
T  21226315 ttttctcaaaggtattaaagctgaatgcaagggacatgttcactcataagaaattca 21226259  T

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Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 21225023 - 21224854
Alignment:
Q  13 catcatcatctcattactacacctccaccaccatcaacaacaataacaccacctaagttaaaagctagaaat-taaagttgttttctcgtaaaaagattg 111  Q
    |||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| ||||||| |||| ||||| ||||||||| ||  ||| |||    
T  21225023 catcatcatctcgttattacacctccaccaccatcaataacaataacaccacctaagtt-aaagctataaatctaaagatgttttctcataggaagcttg 21224925  T
Q  112 ttttctcaaaggcattaaagctgaatgcaagggatatgttcacttataagaacttcacaatttttattgaaag 184  Q
    |||||||||||| ||||||||| ||||||||||| ||||||||| ||||||||||  |||||||||| |||||    
T  21224924 ttttctcaaaggtattaaagcttaatgcaagggacatgttcactcataagaactt--caatttttatggaaag 21224854  T

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Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 3986774 - 3986863
Alignment:
Q  10 catcatcatcatctcattactacacctccaccaccatcaacaacaataacaccacctaagttaaaagctagaaa-ttaaagttgttttctc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| ||||||||||||||||    
T  3986774 catcatcatcatctcattactacacctccaccaccatcaacaacaataacaccacctaagtt-aaagttataaatttaaagttgttttctc 3986863  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 32390265 - 32390323
Alignment:
Q  16 catcatctcattactacacctcca-ccaccatcaacaacaataacaccacctaagttaa 73  Q
    ||||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||    
T  32390265 catcatctcattacttcatctccaaccaccatcaacaacaataacaccacctaaattaa 32390323  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 25933071 - 25933116
Alignment:
Q  10 catcatcatcatctcattactacacctccaccaccatcaacaacaa 55  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||    
T  25933071 catcatcatcatctcatcactacacctccactaccatcaacaacaa 25933116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 41590732 - 41590693
Alignment:
Q  13 catcatcatctcattactacacctccaccaccatcaacaa 52  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  41590732 catcatcatctcattattacacctccaccaccatcaacaa 41590693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 23256525 - 23256579
Alignment:
Q  16 catcatctcattactacacctcca-ccaccatcaacaacaataacaccacctaag 69  Q
    ||||||||||||||  |||||||| |||||||||||||||||||||| |||||||    
T  23256525 catcatctcattacgtcacctccaaccaccatcaacaacaataacacgacctaag 23256579  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 28325449 - 28325487
Alignment:
Q  14 atcatcatctcattactacacctccaccaccatcaacaa 52  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  28325449 atcatcatctcatcactacacctccaccaccatcaacaa 28325487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 41516108 - 41516070
Alignment:
Q  14 atcatcatctcattactacacctccaccaccatcaacaa 52  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  41516108 atcatcatctcatcactacacctccaccaccatcaacaa 41516070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 41590290 - 41590248
Alignment:
Q  13 catcatcatctcattactacacctccaccaccatcaacaacaa 55  Q
    |||||||||||||||| ||||||||||||| ||||||||||||    
T  41590290 catcatcatctcattattacacctccaccatcatcaacaacaa 41590248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 3986854 - 3986926
Alignment:
Q  109 ttgttttctcaaaggcattaaagctgaatgcaagggatatgttcacttataagaacttcacaatttttattgaaag 184  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||| ||| ||   |||||||||||||| || |||||    
T  3986854 ttgttttctcaaaggtattaaagctgaatgcaaaggacatgttaactcat---aacttcacaattttcatggaaag 3986926  T

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Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 35942673 - 35942583
Alignment:
Q  9 acatcatcatcatctcattactacacctccaccaccatcaacaacaataacaccacctaagttaaaagctagaa-attaaagttgttttctc 99  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||  ||||||||||||||||    
T  35942673 acatcaccatcatctcattactacacctccaccaccatcaacaacaataacatcacctaagtt-aaagctaaaattttaaagttgttttctc 35942583  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 16111026 - 16110961
Alignment:
Q  110 tgttttctcaaaggcattaaagctgaatgcaagggatatgttcacttataagaacttcacaatttt 175  Q
    |||||||| ||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  16111026 tgttttctaaaaggtattaaagctgaatgcaagggacatgttcactcataagaacttcacaatttt 16110961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 35942592 - 35942517
Alignment:
Q  109 ttgttttctcaaaggcattaaagctgaatgcaagggatatgttcacttataagaacttcacaatttttattgaaag 184  Q
    ||||||||||||||| ||||||| ||||||||||||| || |||||| ||||||||||||||||||| || |||||    
T  35942592 ttgttttctcaaaggtattaaagttgaatgcaagggacatattcactcataagaacttcacaattttcatggaaag 35942517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 27585877 - 27585790
Alignment:
Q  9 acatcatcatcatctcattactacacctccaccaccatcaacaacaataacaccacctaagttaaaagctagaaat-taaagttgttttctc 99  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||    
T  27585877 acatcatcatcatctcattactacacctcc---accatcaacaacaataacaccacctaagtt-aaagctataaatctaaagttgttttctc 27585790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 36475855 - 36475707
Alignment:
Q  9 acatcatcatcatctcattactacacctccaccaccatcaacaacaataacaccacctaagttaaaagctagaaat-taaagttgtt---------ttct 98  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||| || ||| |||| ||||||||||         ||||    
T  36475855 acatcatcatcatctcattactacacctcc---accatcaacaacaat-acaccacctaagttacaa-ctataaatctaaagttgttttctcatagttct 36475761  T
Q  99 cgtaaaaagattgttttctcaaaggcattaaagctgaatgcaagggatatgttc 152  Q
    | || |||| ||||||||||||||| ||||||||| ||||||||||| ||||||    
T  36475760 catagaaagcttgttttctcaaaggtattaaagctaaatgcaagggacatgttc 36475707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 787732 - 787688
Alignment:
Q  16 catcatctcattactacacctccaccaccatcaacaacaataaca 60  Q
    |||||||||||||||| ||||||| |||| |||||||||||||||    
T  787732 catcatctcattactaaacctccaacaccttcaacaacaataaca 787688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 27021 - 27080
Alignment:
Q  9 acatcatcatcatctcattactacacctccaccaccatcaacaacaataacaccacctaa 68  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27021 acatcatcatcatctcattacttcacctccaccaccatcaacaacaataacaccacctaa 27080  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 21190356 - 21190413
Alignment:
Q  13 catcatcatctcattactacacctcca-ccaccatcaacaacaataacaccacctaag 69  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  21190356 catcatcatctcattacttcacctccaaccaccatcaacaacaataacaccacctaag 21190413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 18749052 - 18749096
Alignment:
Q  13 catcatcatctcattactacacctccaccaccatcaacaacaata 57  Q
    |||||||||||||||| |||||||| |||||||| || |||||||    
T  18749052 catcatcatctcattattacacctctaccaccataaaaaacaata 18749096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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