View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4965_high_5 (Length: 508)
Name: NF4965_high_5
Description: NF4965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4965_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Original strand, 6186265 - 6186757
Alignment:
| Q |
1 |
atggttcaaaaccgagccaaaactttgtcaccttcatctgattcaaagtaagtgtacctattacaaatcacagaatcaaaagtaagattcttgttacaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6186265 |
atggttcaaaaccgagccaaaactttgtcaccttcatctgattcaaagtaagtgtacctattacaaatcacagaatcaaaagtaagattcttgttacaaa |
6186364 |
T |
|
| Q |
101 |
ataaataatcacttttgaaaacagcttttaaagaatcaagtatttttcaatagtacctgttttgtcggtacaaatagtagtagcagatcccatagtctca |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6186365 |
ataaataatcacttttgaaaacagcttttaaagaatcaagtttttttcaatagtacctgttttgtcggtgcaaatagtagtagcagatcccatagtctca |
6186464 |
T |
|
| Q |
201 |
catgcagagagttttctcaccattgcttgatcagccatcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcaggaattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6186465 |
catgcagagagttttctcaccattgcttcatcagccatcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcaggaattg |
6186564 |
T |
|
| Q |
301 |
caacaacaacaatagtaacagcatcagcaataattccaataatcgcattcatcacatcgtcgaaactagtctttctaccgttgaattctctaactccgtt |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||| |||||||||||||||||| |
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| T |
6186565 |
caacaacaacaatagtaacagcatcagcaataattccaataattgcattcatcacatcatcaaaactcgtctttctaccattgaattctctaactccggc |
6186664 |
T |
|
| Q |
401 |
atcagtctttgtgttaccggtgaaatatcgaatcaataaaacaaccaagactaaaaacgcgacaaccaaaccaacttttccgatcgatgatgt |
493 |
Q |
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|||||||||||| || |||||||||||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6186665 |
atcagtctttgtattcccggtgaaatatcgaaccaagagaacaaccaggactaaaaacgcgacaaccaaaccaacttttccgatcgatgatgt |
6186757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 149 - 493
Target Start/End: Original strand, 4243357 - 4243701
Alignment:
| Q |
149 |
aatagtacctgttttgtcggtacaaatagtagtagcagatcccatagtctcacatgcagagagttttctcaccattgcttgatcagccatcattttcttc |
248 |
Q |
| |
|
|||||||||||| || || || |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4243357 |
aatagtacctgtcttatcagtgcaaatagtagtagctgatcccatagtttcacatgcagaaagttttctcaccattgcttgatcagccatcattttcttc |
4243456 |
T |
|
| Q |
249 |
attgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcaggaattgcaacaacaacaatagtaacagcatcagcaataattccaataatcgcat |
348 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| |||||||| || || |||||||| |||||||||||||||||||||||||||||||||| |||| |
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|
| T |
4243457 |
attgaataagcgagtgtcaatgtcacagctaatggtaaaccctcggggatagcaacaacgacaatagtaacagcatcagcaataattccaataactgcat |
4243556 |
T |
|
| Q |
349 |
tcatcacatcgtcgaaactagtctttctaccgttgaattctctaactccgttatcagtctttgtgttaccggtgaaatatcgaatcaataaaacaaccaa |
448 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||| | |
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| T |
4243557 |
tcatcacatcatcgaaactagtctttctaccgttgaactctctaactccgttatcagtctttgtgttcccggtgaaatatcgaatcaacagaacaacaag |
4243656 |
T |
|
| Q |
449 |
gactaaaaacgcgacaaccaaaccaacttttccgatcgatgatgt |
493 |
Q |
| |
|
||||||||| |||||| |||||||||| |||||||| || ||||| |
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|
| T |
4243657 |
gactaaaaatgcgacagccaaaccaacctttccgattgaggatgt |
4243701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 4237173 - 4237226
Alignment:
| Q |
2 |
tggttcaaaaccgagccaaaactttgtcaccttcatctgattcaaagtaagtgt |
55 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||| ||||||| ||| ||||| |
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|
| T |
4237173 |
tggttctaaaccaagccaaaactttgtcaccttcatttgattcatagtgagtgt |
4237226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 316
Target Start/End: Original strand, 38358065 - 38358195
Alignment:
| Q |
186 |
gatcccatagtctcacatgcagagagttttctcaccattgcttgatcagccatcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggca |
285 |
Q |
| |
|
||||||||||| ||||| || || ||||| |||||||| || ||||| ||||||||| | ||||| || || ||||| || | ||||||||| ||||||| |
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| T |
38358065 |
gatcccatagtttcacaagctgaaagtttcctcaccatagcatgatctgccatcattcttttcatggagtaagcaagagttagtgtcacagccaatggca |
38358164 |
T |
|
| Q |
286 |
aaccctcaggaattgcaacaacaacaatagt |
316 |
Q |
| |
|
|||||||||| || ||||| || |||||||| |
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|
| T |
38358165 |
aaccctcagggatggcaacgaccacaatagt |
38358195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 323
Target Start/End: Complemental strand, 47487560 - 47487502
Alignment:
| Q |
265 |
tcaatgtcacagctaatggcaaaccctcaggaattgcaacaacaacaatagtaacagca |
323 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||| |||||||||||||| ||||||||| |
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|
| T |
47487560 |
tcaatgtcacagctaaaggtaaaccttcaggaacagcaacaacaacaattgtaacagca |
47487502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 236 - 297
Target Start/End: Original strand, 39951669 - 39951730
Alignment:
| Q |
236 |
catcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcaggaa |
297 |
Q |
| |
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||||||||||||||||| | ||||||| ||||||| ||||||||||| |||||||| |||| |
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|
| T |
39951669 |
catcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcgggaa |
39951730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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