View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4965_high_7 (Length: 469)
Name: NF4965_high_7
Description: NF4965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4965_high_7 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 19 - 400
Target Start/End: Complemental strand, 11976 - 11595
Alignment:
| Q |
19 |
aagggactgcaacaaatatcatagactcgatattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaa |
118 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11976 |
aagggactgcaacaaatatcatagactcgacattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaa |
11877 |
T |
|
| Q |
119 |
tgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggattgg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11876 |
tgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggattgg |
11777 |
T |
|
| Q |
219 |
agtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggcgcttcaaacacagagctatttccttgctagctggaattttaat |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
11776 |
agtgactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggggcctcaaacacagagctatttccttgctagctggaattttaac |
11677 |
T |
|
| Q |
319 |
cattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11676 |
cattggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
11595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 21 - 400
Target Start/End: Complemental strand, 4318 - 3939
Alignment:
| Q |
21 |
gggactgcaacaaatatcatagactcgatattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatg |
120 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4318 |
gggactgcaacaaatatcatagactcgacattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatg |
4219 |
T |
|
| Q |
121 |
tagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggattggag |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4218 |
tagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggattggag |
4119 |
T |
|
| Q |
221 |
tgactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggcgcttcaaacacagagctatttccttgctagctggaattttaatca |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| || |
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| T |
4118 |
tgactttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggggcctcaaacacagagctatttccttgctagctggaattttaacca |
4019 |
T |
|
| Q |
321 |
ttggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4018 |
ttggaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
3939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 24 - 400
Target Start/End: Complemental strand, 6510291 - 6509915
Alignment:
| Q |
24 |
actgcaacaaatatcatagactcgatattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtag |
123 |
Q |
| |
|
|||||||||| ||||||||| || | |||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6510291 |
actgcaacaattatcatagattctactttaaacaatgattcacgaaatgaaatttttagatgtattcatattggattactttgtgttcaagagaatgtag |
6510192 |
T |
|
| Q |
124 |
ctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggattggagtga |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6510191 |
ctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggattggagtga |
6510092 |
T |
|
| Q |
224 |
ctttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggcgcttcaaacacagagctatttccttgctagctggaattttaatcattg |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6510091 |
ctttcaagatacgaacccgccaagctcagctcaagaattatcggtcaacggggcctcaaacacagagctatttccttgctagctggaattttaaccattg |
6509992 |
T |
|
| Q |
324 |
gaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6509991 |
gaatgaccgtgatacccataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
6509915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 24 - 215
Target Start/End: Complemental strand, 6497305 - 6497114
Alignment:
| Q |
24 |
actgcaacaaatatcatagactcgatattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtag |
123 |
Q |
| |
|
|||||||||| ||||||||| | | |||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6497305 |
actgcaacaagtatcatagatcccacgttaaacaatgattcacgaaatgaaatgttgagatgtatacatattggattactttgtgttcaagagaatgtag |
6497206 |
T |
|
| Q |
124 |
ctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggat |
215 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6497205 |
ctagcaggccaagcatggctactgtagtagtgatgctaaatagtgattcagttactctcccaatgcctttggaacctgcatttcatatggat |
6497114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 6502640 - 6502468
Alignment:
| Q |
21 |
gggactgcaacaaatatcatagactcgatattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6502640 |
gggactgcaacaaatatcatagactcgacattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaata |
6502541 |
T |
|
| Q |
121 |
tagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgccttt |
193 |
Q |
| |
|
||| | || |||| |||||||||| ||||||||||||||||||| || ||||||||||| ||||||||||| |
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|
| T |
6502540 |
tagtaaatagaccaaccatggcttctattgtagtgatgcttaatagcgactctgttactcttccaatgccttt |
6502468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 21 - 211
Target Start/End: Complemental strand, 6514658 - 6514468
Alignment:
| Q |
21 |
gggactgcaacaaatatcatagactcgatattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatg |
120 |
Q |
| |
|
||||||||| ||||||||||||| | | |||||||||||| |||| |||||| ||| | |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6514658 |
gggactgcagcaaatatcatagatccaacattaaacaatgactcactaaatgagataatgagatgtatccatattggattactttgtgttcaagagaatg |
6514559 |
T |
|
| Q |
121 |
tagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatat |
211 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||| ||||||||| |||||||||||||||||| |||||| |||||||||||||||| |
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|
| T |
6514558 |
tagctagcagaccaaccatggcttctgttgtagtgacgcttaatagcccttctgttactctcccaattcctttgcaacctgcatttcatat |
6514468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 182
Target Start/End: Original strand, 6525879 - 6526011
Alignment:
| Q |
50 |
attaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgtt |
149 |
Q |
| |
|
|||||||||||||||| || |||||| | ||||| ||||| ||||| ||||||||||||||||| |||| |||||||||||||| ||||||||| || |
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|
| T |
6525879 |
attaaacaatgattcagtgaacgaaataatgagatgcatccacattgggttactttgtgttcaagaaaatgcagctagcaggccaactatggcttctatt |
6525978 |
T |
|
| Q |
150 |
gtagtgatgcttaatagtgattctgttactctc |
182 |
Q |
| |
|
||| | |||||||||||| ||||| | |||||| |
|
|
| T |
6525979 |
gtactaatgcttaatagtcattctctcactctc |
6526011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 50 - 192
Target Start/End: Original strand, 47771525 - 47771667
Alignment:
| Q |
50 |
attaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgtt |
149 |
Q |
| |
|
|||||||||| |||| |||||||||| | ||||| ||||||||||| ||||||||||||||||| ||||||| | ||| |||| ||||||| ||||| |
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|
| T |
47771525 |
attaaacaatatttcagcaaatgaaataatgagatgcatccatattggcttactttgtgttcaagaaaatgtagttgacagaccaaccatggctactgtt |
47771624 |
T |
|
| Q |
150 |
gtagtgatgcttaatagtgattctgttactctcccaatgcctt |
192 |
Q |
| |
|
| | | |||||||||||| ||||| | |||||| |||| |||| |
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|
| T |
47771625 |
gcactcatgcttaatagttattctctcactctctcaatacctt |
47771667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 50 - 192
Target Start/End: Original strand, 47775677 - 47775819
Alignment:
| Q |
50 |
attaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgtt |
149 |
Q |
| |
|
|||||||||| |||| |||||||||| | |||||||||||||||| ||||||||||||||||| ||||||| | ||| |||| ||||||| ||||| |
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|
| T |
47775677 |
attaaacaatatttcagcaaatgaaataatgagatgtatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgtt |
47775776 |
T |
|
| Q |
150 |
gtagtgatgcttaatagtgattctgttactctcccaatgcctt |
192 |
Q |
| |
|
| | | |||||||||||| ||||| | |||||| |||| |||| |
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|
| T |
47775777 |
gcactcatgcttaatagttattctctcactctctcaatacctt |
47775819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 27367975 - 27367905
Alignment:
| Q |
132 |
ccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgc |
202 |
Q |
| |
|
|||| |||||||||||||| ||| |||||||||||| ||||| || ||||| |||| |||| | ||||||| |
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|
| T |
27367975 |
ccaaccatggcttctgttgcagtcatgcttaatagttattctcttgctctctcaataccttcgaaacctgc |
27367905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 28843869 - 28843804
Alignment:
| Q |
62 |
ttcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctag |
127 |
Q |
| |
|
|||| |||||||||| | ||||| || |||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
28843869 |
ttcaagaaatgaaatcatgagatgcattcatattgggttactttgtgtgcaagacaatgtagctag |
28843804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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