View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4965_low_10 (Length: 457)

Name: NF4965_low_10
Description: NF4965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4965_low_10
NF4965_low_10
[»] chr1 (22 HSPs)
chr1 (10-439)||(8861243-8861672)
chr1 (10-317)||(9085768-9086078)
chr1 (10-317)||(9069469-9069782)
chr1 (10-342)||(9124915-9125250)
chr1 (18-172)||(8978910-8979064)
chr1 (220-430)||(8978673-8978883)
chr1 (19-165)||(9337783-9337929)
chr1 (28-165)||(9364651-9364788)
chr1 (45-165)||(8927222-8927342)
chr1 (46-165)||(9236124-9236243)
chr1 (46-165)||(9377990-9378109)
chr1 (23-165)||(9242256-9242398)
chr1 (229-317)||(8962768-8962856)
chr1 (45-165)||(8939648-8939768)
chr1 (206-313)||(9097887-9097994)
chr1 (46-165)||(9300366-9300485)
chr1 (259-317)||(8939871-8939929)
chr1 (31-165)||(8962561-8962695)
chr1 (245-311)||(9235972-9236038)
chr1 (245-315)||(9378195-9378265)
chr1 (270-317)||(8927459-8927506)
chr1 (268-317)||(9495781-9495830)
[»] scaffold0690 (1 HSPs)
scaffold0690 (40-165)||(1872-1997)
[»] chr6 (4 HSPs)
chr6 (40-165)||(15910109-15910234)
chr6 (116-158)||(31145374-31145416)
chr6 (116-158)||(31171687-31171729)
chr6 (106-158)||(31201239-31201291)
[»] chr3 (1 HSPs)
chr3 (46-165)||(9171775-9171894)


Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 10 - 439
Target Start/End: Complemental strand, 8861672 - 8861243
Alignment:
Q  10 aagaatattagtgttgtgtccatgacagctgctaagggaaccttgggatacatggcgcctgaagttctatcaagaaattttgggaatgtttctcttaagt 109  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8861672 aagaatcttagcgttgtgtccatgacagctgctaagggaaccttgggatacatggcgcctgaagttctatcaagaaattttgggaatgtgtctcttaagt 8861573  T
Q  110 cagatatttacagttacggaatgttgttgctagaaatggttggagggagaaagaatgtagacacgtttgcagaaacttttcatgtgctatacccagaatg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8861572 cagatatttacagttacggaatgttgttgctagaaatggttggagggagaaagaatgtagacacgtctgcagaaacttttcatgtgctatacccagaatg 8861473  T
Q  210 gatccataacttattggaaggagatatacgtatccatattgaggatgaaggagatcttaaaattgcaaagaaacttgcaattgttggactttggtgcatt 309  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8861472 gatccataacttattggaaggagatataagtatccatattgaggatgaaggagatcttaaaattgcaaagaaacttgcaattgttggactttggtgcatt 8861373  T
Q  310 caatggcaaccgacaaatcgtccatcaataaaaaatgttgtgcaaatgttggaagccggagaggatatcgagttaattgtgcctcctaatccttttcact 409  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8861372 caatggcaaccgataaatcgtccatcaataaaaaatgttgtgcaaatgttggaaaccggagaggatatcgagttaattgtgcctcctaatccttttcact 8861273  T
Q  410 cgatgacttccataaccactaatgatcaac 439  Q
    ||||||||||||||||||||||||||||||    
T  8861272 cgatgacttccataaccactaatgatcaac 8861243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 10 - 317
Target Start/End: Complemental strand, 9086078 - 9085768
Alignment:
Q  10 aagaatattagtgttgtgtccatgacagctgctaagggaaccttgggatacatggcgcctgaagttctatcaagaaattttgggaatgtttctcttaagt 109  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  9086078 aagaatattagtgtagtgtccatgacagctgctaggggaaccttgggatatatggcgcctgaagttttgtcacgaaattttgggaatgtttctcttaagt 9085979  T
Q  110 cagatatttacagttacggaatgttgttgctagaaatggttggagggagaaagaatgtagac---acgtttgcagaaacttttcatgtgctatacccaga 206  Q
    | |||||||| ||||| || |||||||||||||| |||||||| || || ||||||||||||    | | |||||||||||| |||    |||||| |||    
T  9085978 ctgatatttatagttatgggatgttgttgctagagatggttggtggaaggaagaatgtagactcatcatctgcagaaactttccatagtttataccgaga 9085879  T
Q  207 atggatccataacttattggaaggagatatacgtatccatattgaggatgaaggagatcttaaaattgcaaagaaacttgcaattgttggactttggtgc 306  Q
    ||||||  |||| |||||||||||||| |||  |||  ||||||| || ||||| |||   ||  ||||||||||||| |||||||| ||||||||||||    
T  9085878 atggatttataatttattggaaggagacatatatatgaatattgaagacgaaggtgatgcgaagtttgcaaagaaactcgcaattgtcggactttggtgc 9085779  T
Q  307 attcaatggca 317  Q
    ||||| |||||    
T  9085778 attcagtggca 9085768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 10 - 317
Target Start/End: Complemental strand, 9069782 - 9069469
Alignment:
Q  10 aagaatattagtgttgtgtccatgacagctgctaagggaaccttgggatacatggcgcctgaagttctatcaagaaattttgggaatgtttctcttaagt 109  Q
    |||||| ||||| | ||||||||||||||||||| ||||||||||||||| ||||| || |||||  | ||  |||||||||| ||||||||||||||||    
T  9069782 aagaatcttagtatagtgtccatgacagctgctaggggaaccttgggatatatggcacccgaagtagtgtctcgaaattttggaaatgtttctcttaagt 9069683  T
Q  110 cagatatttacagttacggaatgttgttgctagaaatggttggagggagaaagaatgtagacacg---tttgcagaaacttttcatgtgctatacccaga 206  Q
    | ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||  ||   | |||||||  ||| |||||  ||||||| ||    
T  9069682 ctgatatatacagttatggaatgttgttgctagaaatggttggaggaagaaagaatgtagattcgtcatctgcagaagatttgcatgttttatacccgga 9069583  T
Q  207 atggatccataacttattggaaggagatatacgtatccatattgaggatgaa---ggagatcttaaaattgcaaagaaacttgcaattgttggactttgg 303  Q
    |||||| |||||||||||||||||||| |||| |||  || |||| ||||||   ||  ||  ||||||||||| ||||||||||||||| |||||||||    
T  9069582 atggattcataacttattggaaggagacatacatataaatgttgaagatgaagttggcaatgctaaaattgcaaggaaacttgcaattgtcggactttgg 9069483  T
Q  304 tgcattcaatggca 317  Q
    || ||||| |||||    
T  9069482 tgtattcagtggca 9069469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 10 - 342
Target Start/End: Complemental strand, 9125250 - 9124915
Alignment:
Q  10 aagaatattagtgttgtgtccatgacagctgctaagggaaccttgggatacatggcgcctgaagttctatcaagaaattttgggaatgtttctcttaagt 109  Q
    |||||| |||||||||| |||||||| || ||||  |||||||||||||| ||||| ||||||||| | ||| |||||||||| |||||||||| |||||    
T  9125250 aagaatgttagtgttgtatccatgactgcggctagaggaaccttgggatatatggcacctgaagttttgtcacgaaattttggaaatgtttctcgtaagt 9125151  T
Q  110 cagatatttacagttacggaatgttgttgctagaaatggttggagggagaaagaatgtaga---cacgtttgcagaaacttttcatgtgctatacccaga 206  Q
    | |||||||| ||||| || ||||||||||| ||| ||||||||||  | |||||||||||   |  || ||  |||| ||| |||||  |||| |||||    
T  9125150 ctgatatttatagttatgggatgttgttgctggaattggttggaggacgcaagaatgtagattccttgtctgatgaaaatttccatgttttatatccaga 9125051  T
Q  207 atggatccataacttattggaaggagatatacgtatccatattgaggatgaaggagatcttaaaattgcaaagaaacttgcaattgttggactttggtgc 306  Q
    |||||| |||||| ||||||||||||||| || |||  ||||||| ||||| |  ||| ||||||||||||||||||| ||||||||||||||||||||     
T  9125050 atggattcataacctattggaaggagatacacatataaatattgaagatgaggatgatattaaaattgcaaagaaactcgcaattgttggactttggtgt 9124951  T
Q  307 attcaatggcaaccgacaaatcgtccatcaataaaa 342  Q
    ||||||||||| || | ||||||||| || ||||||    
T  9124950 attcaatggcagccaataaatcgtccctccataaaa 9124915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 8979064 - 8978910
Alignment:
Q  18 tagtgttgtgtccatgacagctgctaagggaaccttgggatacatggcgcctgaagttctatcaagaaattttgggaatgtttctcttaagtcagatatt 117  Q
    |||||| |||||||||||||| |||| ||| ||||||||||| ||||| ||||||||||| |||||||||||||| ||||| |||||||| || ||||||    
T  8979064 tagtgtagtgtccatgacagcggctaggggtaccttgggatatatggcacctgaagttctgtcaagaaattttggtaatgtgtctcttaaatctgatatt 8978965  T
Q  118 tacagttacggaatgttgttgctagaaatggttggagggagaaagaatgtagaca 172  Q
    || || || ||||||||||||||||||||||||| ||| || |||||| ||||||    
T  8978964 tatagctatggaatgttgttgctagaaatggttgcaggaaggaagaatatagaca 8978910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 220 - 430
Target Start/End: Complemental strand, 8978883 - 8978673
Alignment:
Q  220 ttattggaaggagatatacgtatccatattgaggatgaaggagatcttaaaattgcaaagaaacttgcaattgttggactttggtgcattcaatggcaac 319  Q
    |||||||||||||| |||| |||||| ||||| |||||  | |||  ||||||||| || |||||||||||||||||||||||||||||||| ||||| |    
T  8978883 ttattggaaggagacatacatatccacattgacgatgagtgtgattataaaattgccaaaaaacttgcaattgttggactttggtgcattcagtggcacc 8978784  T
Q  320 cgacaaatcgtccatcaataaaaaatgttgtgcaaatgttggaagccggagaggatatcgagttaattgtgcctcctaatccttttcactcgatgacttc 419  Q
    |   |||||||||||| || |||  |||  | |||||||||||  | ||||| || | | | |||| |||||||||||||||||||||| ||| ||||||    
T  8978783 ccggaaatcgtccatccatcaaatctgtcatccaaatgttggagactggagaagacaaccaattaactgtgcctcctaatccttttcacccgacgacttc 8978684  T
Q  420 cataaccacta 430  Q
    ||| |||||||    
T  8978683 cattaccacta 8978673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 9337783 - 9337929
Alignment:
Q  19 agtgttgtgtccatgacagctgctaagggaaccttgggatacatggcgcctgaagttctatcaagaaattttgggaatgtttctcttaagtcagatattt 118  Q
    ||||| || |||||||| || ||||||||||| || || |||||||| ||||||||| | |||||||| ||||| ||||| |||  |||||| ||||| |    
T  9337783 agtgtcgtatccatgactgcagctaagggaacattaggctacatggcacctgaagttttttcaagaaactttggtaatgtctcttataagtctgatatat 9337882  T
Q  119 acagttacggaatgttgttgctagaaatggttggagggagaaagaat 165  Q
    |||||||||| ||||| ||| | |||||||||||||| |||||||||    
T  9337883 acagttacggtatgttattgttggaaatggttggaggaagaaagaat 9337929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 9364651 - 9364788
Alignment:
Q  28 tccatgacagctgctaagggaaccttgggatacatggcgcctgaagttctatcaagaaattttgggaatgtttctcttaagtcagatatttacagttacg 127  Q
    |||||||| || ||||||||||| || || |||||||| ||||||||| | |||||||| ||||| ||||| |||  |||||| ||||| ||||||||||    
T  9364651 tccatgactgcagctaagggaacattaggctacatggcacctgaagttttttcaagaaactttggtaatgtctcttataagtctgatatatacagttacg 9364750  T
Q  128 gaatgttgttgctagaaatggttggagggagaaagaat 165  Q
    | ||||| ||| | |||||||||||||| |||||||||    
T  9364751 gtatgttattgttggaaatggttggaggaagaaagaat 9364788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 45 - 165
Target Start/End: Original strand, 8927222 - 8927342
Alignment:
Q  45 gggaaccttgggatacatggcgcctgaagttctatcaagaaattttgggaatgtttctcttaagtcagatatttacagttacggaatgttgttgctagaa 144  Q
    |||||| || || |||||||| ||||||||| | ||  |||| ||||||||||| |||  |||||| ||||| ||||| ||||| ||||||||||||||     
T  8927222 gggaacattaggttacatggcacctgaagttttttctcgaaactttgggaatgtctcttataagtctgatatatacagctacggtatgttgttgctagag 8927321  T
Q  145 atggttggagggagaaagaat 165  Q
    ||||||||||| |||||||||    
T  8927322 atggttggaggaagaaagaat 8927342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 165
Target Start/End: Complemental strand, 9236243 - 9236124
Alignment:
Q  46 ggaaccttgggatacatggcgcctgaagttctatcaagaaattttgggaatgtttctcttaagtcagatatttacagttacggaatgttgttgctagaaa 145  Q
    ||||||||||||||||| || ||||||||| | || ||||| || || |||||||||  |||||| |||||||| || ||||| ||||||||||| || |    
T  9236243 ggaaccttgggatacattgcacctgaagttttctcgagaaacttcggaaatgtttcttataagtctgatatttatagctacggtatgttgttgcttgaga 9236144  T
Q  146 tggttggagggagaaagaat 165  Q
    ||||||| || |||||||||    
T  9236143 tggttggtggaagaaagaat 9236124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 165
Target Start/End: Original strand, 9377990 - 9378109
Alignment:
Q  46 ggaaccttgggatacatggcgcctgaagttctatcaagaaattttgggaatgtttctcttaagtcagatatttacagttacggaatgttgttgctagaaa 145  Q
    ||||| ||||| ||||| || ||||||||| | |||||||| || || |||||||||   ||||| |||||||| || |||||||| ||||||||||| |    
T  9377990 ggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatatttatagctacggaatattgttgctagaga 9378089  T
Q  146 tggttggagggagaaagaat 165  Q
    |||||||||| |||||||||    
T  9378090 tggttggaggtagaaagaat 9378109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 9242398 - 9242256
Alignment:
Q  23 ttgtgtccatgacagctgctaagggaaccttgggatacatggcgcctgaagttctatcaagaaattttgggaatgtttctcttaagtcagatatttacag 122  Q
    |||| |||||||| || |||||||||||  | || |||||||| ||||||||| | || ||||||||||| ||||| |||  |||||| ||| | |||||    
T  9242398 ttgtatccatgactgcggctaagggaacagtaggctacatggcacctgaagttttttctagaaattttggaaatgtctcttataagtccgatgtatacag 9242299  T
Q  123 ttacggaatgttgttgctagaaatggttggagggagaaagaat 165  Q
    |||||| ||||| ||| | || ||||||||||| |||||||||    
T  9242298 ttacggtatgttattgttggagatggttggaggaagaaagaat 9242256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 317
Target Start/End: Original strand, 8962768 - 8962856
Alignment:
Q  229 ggagatatacgtatccatattgaggatgaaggagatcttaaaattgcaaagaaacttgcaattgttggactttggtgcattcaatggca 317  Q
    |||||||||| ||||| |||||| || || ||||||  || ||||||||||||||| |||||||| ||||||||||||||||| |||||    
T  8962768 ggagatatacatatccctattgatgaagatggagattatagaattgcaaagaaactagcaattgtcggactttggtgcattcagtggca 8962856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 165
Target Start/End: Original strand, 8939648 - 8939768
Alignment:
Q  45 gggaaccttgggatacatggcgcctgaagttctatcaagaaattttgggaatgtttctcttaagtcagatatttacagttacggaatgttgttgctagaa 144  Q
    |||||| || || |||||||| ||||||||| | ||  |||| ||||||||||| |||  |||||| ||||| ||||| ||||| |||||| |||| ||     
T  8939648 gggaactttagggtacatggcacctgaagttttttctcgaaactttgggaatgtctcttataagtctgatatatacagctacggtatgttgctgctggag 8939747  T
Q  145 atggttggagggagaaagaat 165  Q
    ||||||||||| |||||||||    
T  8939748 atggttggaggaagaaagaat 8939768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 313
Target Start/End: Complemental strand, 9097994 - 9097887
Alignment:
Q  206 aatggatccataacttattggaaggagatatacgtatccatattgaggatgaaggagatcttaaaattgcaaagaaacttgcaattgttggactttggtg 305  Q
    ||||||| || | ||||||||||||||| |||  |||  ||||||| |  ||||| ||| ||||| | |||||||||||||||||||  | |||||||||    
T  9097994 aatggattcaaaccttattggaaggagacatatatataaatattgaaggggaaggtgatgttaaactggcaaagaaacttgcaattgccgaactttggtg 9097895  T
Q  306 cattcaat 313  Q
    ||||||||    
T  9097894 cattcaat 9097887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 165
Target Start/End: Original strand, 9300366 - 9300485
Alignment:
Q  46 ggaaccttgggatacatggcgcctgaagttctatcaagaaattttgggaatgtttctcttaagtcagatatttacagttacggaatgttgttgctagaaa 145  Q
    ||||| || ||||||||||| || |||||| | || ||||| ||||||||||| |||  |||||| ||||| || ||||| || ||||||||||| || |    
T  9300366 ggaacattaggatacatggcacccgaagttttttctagaaactttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggaga 9300465  T
Q  146 tggttggagggagaaagaat 165  Q
    ||||||| || || ||||||    
T  9300466 tggttgggggaaggaagaat 9300485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 317
Target Start/End: Original strand, 8939871 - 8939929
Alignment:
Q  259 ggagatcttaaaattgcaaagaaacttgcaattgttggactttggtgcattcaatggca 317  Q
    |||||| ||| ||||||||||||||| || ||||| ||||||||||||||||| |||||    
T  8939871 ggagattttagaattgcaaagaaactagcgattgtcggactttggtgcattcagtggca 8939929  T

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Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 165
Target Start/End: Original strand, 8962561 - 8962695
Alignment:
Q  31 atgacagctgctaagggaaccttgggatacatggcgcctgaagttctatcaagaaattttgggaatgtttctcttaagtcagatatttacagttacggaa 130  Q
    ||||| || |||| |||||| || ||||||||||| ||||||||  | ||  |||| ||||||||||| |||  ||| || ||||| ||||| || ||||    
T  8962561 atgactgcggctaggggaacattaggatacatggcacctgaagtattttctcgaaactttgggaatgtctcttataaatctgatatatacagctatggaa 8962660  T
Q  131 tgttgttgctagaaatggttggagggagaaagaat 165  Q
    ||||| |||| || ||||| ||||| |||||||||    
T  8962661 tgttgctgctggagatggtcggaggaagaaagaat 8962695  T

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Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 311
Target Start/End: Complemental strand, 9236038 - 9235972
Alignment:
Q  245 atattgaggatgaaggagatcttaaaattgcaaagaaacttgcaattgttggactttggtgcattca 311  Q
    ||||||||||||| |||||| ||| ||||||||||||||||||  | || ||||||||||| |||||    
T  9236038 atattgaggatgagggagatgttagaattgcaaagaaacttgcgctggtcggactttggtgtattca 9235972  T

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Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 315
Target Start/End: Original strand, 9378195 - 9378265
Alignment:
Q  245 atattgaggatgaaggagatcttaaaattgcaaagaaacttgcaattgttggactttggtgcattcaatgg 315  Q
    ||||||||||||| |||||| ||| ||| ||||||||||||||  | || ||||||||||| |||||||||    
T  9378195 atattgaggatgagggagatgttagaatcgcaaagaaacttgcgctggtcggactttggtgtattcaatgg 9378265  T

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Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 317
Target Start/End: Original strand, 8927459 - 8927506
Alignment:
Q  270 aattgcaaagaaacttgcaattgttggactttggtgcattcaatggca 317  Q
    ||||||||| ||||| |||||||| ||||||||||||||||| |||||    
T  8927459 aattgcaaaaaaactagcaattgtcggactttggtgcattcagtggca 8927506  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 9495781 - 9495830
Alignment:
Q  268 aaaattgcaaagaaacttgcaattgttggactttggtgcattcaatggca 317  Q
    ||||| || ||||||||||| |||| |||||||||||| |||||||||||    
T  9495781 aaaatagcgaagaaacttgcgattgctggactttggtgtattcaatggca 9495830  T

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Target: scaffold0690 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 165
Target Start/End: Original strand, 1872 - 1997
Alignment:
Q  40 gctaagggaaccttgggatacatggcgcctgaagttctatcaagaaattttgggaatgtttctcttaagtcagatatttacagttacggaatgttgttgc 139  Q
    ||||||||||| || || |||||||| ||||||||| | || ||||||||||| ||||| |||  |||||| ||||| ||||||||||| ||||| |||     
T  1872 gctaagggaacattaggctacatggcacctgaagttttttctagaaattttggaaatgtctcttataagtccgatatatacagttacggtatgttattgt 1971  T
Q  140 tagaaatggttggagggagaaagaat 165  Q
    | || ||||||||||| |||||||||    
T  1972 tggagatggttggaggaagaaagaat 1997  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 165
Target Start/End: Complemental strand, 15910234 - 15910109
Alignment:
Q  40 gctaagggaaccttgggatacatggcgcctgaagttctatcaagaaattttgggaatgtttctcttaagtcagatatttacagttacggaatgttgttgc 139  Q
    ||||||||||| || || |||||||| ||||||||| | || ||||||||||| ||||| |||  |||||| ||||| ||||||||||| ||||| |||     
T  15910234 gctaagggaacattaggctacatggcacctgaagttttttctagaaattttggaaatgtctcttataagtccgatatatacagttacggtatgttattgt 15910135  T
Q  140 tagaaatggttggagggagaaagaat 165  Q
    | || ||||||||||| |||||||||    
T  15910134 tggagatggttggaggaagaaagaat 15910109  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 31145416 - 31145374
Alignment:
Q  116 tttacagttacggaatgttgttgctagaaatggttggagggag 158  Q
    |||| ||||| |||||| |||||||||||||||||||||||||    
T  31145416 tttatagttatggaatgatgttgctagaaatggttggagggag 31145374  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 31171729 - 31171687
Alignment:
Q  116 tttacagttacggaatgttgttgctagaaatggttggagggag 158  Q
    |||| ||||| |||||| |||||||||||||||||||||||||    
T  31171729 tttatagttatggaatgatgttgctagaaatggttggagggag 31171687  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 31201291 - 31201239
Alignment:
Q  106 aagtcagatatttacagttacggaatgttgttgctagaaatggttggagggag 158  Q
    ||||| ||| |||| ||||| |||||| ||||||| |||||||||||||||||    
T  31201291 aagtccgatgtttatagttatggaatgatgttgctggaaatggttggagggag 31201239  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 165
Target Start/End: Original strand, 9171775 - 9171894
Alignment:
Q  46 ggaaccttgggatacatggcgcctgaagttctatcaagaaattttgggaatgtttctcttaagtcagatatttacagttacggaatgttgttgctagaaa 145  Q
    ||||| || ||||||||||| || |||||| | || ||||||||||||||||| |||  |||||| ||||| || || || || |||||| |  | ||||    
T  9171775 ggaacattaggatacatggcacccgaagttttttctagaaattttgggaatgtctcttataagtctgatatatatagctatggtatgttgctattggaaa 9171874  T
Q  146 tggttggagggagaaagaat 165  Q
    | |||||||| |||||||||    
T  9171875 ttgttggaggaagaaagaat 9171894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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