View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4965_low_11 (Length: 421)
Name: NF4965_low_11
Description: NF4965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4965_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 147 - 404
Target Start/End: Original strand, 36276609 - 36276866
Alignment:
| Q |
147 |
acttcctgaacagaccttgtaattatgttagatgcctcttaaataatgttcaattttacttatttggccaaagcacttgatacacgtcttagagacgcat |
246 |
Q |
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| T |
36276609 |
acttcctgaacaaaccttataattatgttagatgcctcttaaataatgttcaattttacttatttggccaaaacacttgatacacgtcttagagacgcat |
36276708 |
T |
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| Q |
247 |
gcaccaagagagactaattatggttggttattttttgaacactcctaactaatgcagtcagaattgagaatcgagatcttccgtaggatcaatcaaccga |
346 |
Q |
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| T |
36276709 |
gtaccaagagagaataattatggttggttattttttgaacactcctaactaatgcagtcagaattgaaaatcgagatcttccgtaggatcaatcaaccga |
36276808 |
T |
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| Q |
347 |
tgaaggaacgtaaaaacgaggaatataacatagttcgaaagtacgataagtaggttat |
404 |
Q |
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| T |
36276809 |
tgaaggaacgtaaaaacaaggaatataacatagttcgaaagtaccataagtaggttat |
36276866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 36276455 - 36276589
Alignment:
| Q |
13 |
aaaatatatgctccatttgataaataaaattgtttcaggaggtaatctaactccatttgcatatatcggaaaaggacaatatgtcctcttattttaatta |
112 |
Q |
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| T |
36276455 |
aaaatatatgctccatttgataaataaaattgtttcaggaggtaatctaactccatttgc------------------atatgtcctcttattttaatta |
36276536 |
T |
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| Q |
113 |
c-tccatttgtatagtattagattagatatcagacacttcctgaacagacctt |
164 |
Q |
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| T |
36276537 |
cgaccatttgtatagtattagattagatatcagacacttcctgaacagacctt |
36276589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 404
Target Start/End: Complemental strand, 33966950 - 33966893
Alignment:
| Q |
347 |
tgaaggaacgtaaaaacgaggaatataacatagttcgaaagtacgataagtaggttat |
404 |
Q |
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| T |
33966950 |
tgaaggaacgtaaaagcgaggaatgtaacacagttcgtaagtaggatcggtaggttat |
33966893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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