View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4965_low_13 (Length: 367)
Name: NF4965_low_13
Description: NF4965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4965_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 349
Target Start/End: Original strand, 45675224 - 45675562
Alignment:
| Q |
11 |
cacagattgagagaagtatcctttaacagaacaaaaggaggtaggaagaagnnnnnnnntagacataaaaaattaaagaacagtaacaaaacatgcaagt |
110 |
Q |
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| T |
45675224 |
cacagattgagagaagtatcctttaacagaacaaaaggaggtaggaagaagaaaaaaaatagacataaaaaattaaagaacagtaacaaaacatgcaagt |
45675323 |
T |
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| Q |
111 |
tcagacgttggacaaacaagttcagaggaatccatgggaccagacacaggggccatttcgtaatcatctactatgtagtgaactcactcggtgcttatct |
210 |
Q |
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| T |
45675324 |
tcagaagttggacaaacaagttcagaggaatccatgtgaccagacacaggggccatttcgtaatcatctactatgaagtgaactcactcggtgcttatct |
45675423 |
T |
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| Q |
211 |
ctatatttccccttcccaaagattttgtactgtgttttctcttattctcaattgaagaaaggagtatgtaaaaactttaatatttcatctaatgtaaatg |
310 |
Q |
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| T |
45675424 |
ctatatttccctttcccaaagattttgtactgtgttttctcttattctcaattgaagaaaggagtatgtacgtactttaatatttcatctaatgtaaatg |
45675523 |
T |
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| Q |
311 |
tgagtattttaatttaattttacatactccatggctagt |
349 |
Q |
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| T |
45675524 |
tgagtatcttaatttaattttacattctccatggctagt |
45675562 |
T |
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