View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4965_low_15 (Length: 347)
Name: NF4965_low_15
Description: NF4965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4965_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 11685472 - 11685799
Alignment:
| Q |
1 |
catgttataagaaaatcaatattaaacactagtcatgtttatacaaaaattgtttagttatatatgtgtttatgtgtgttttaatatttatattgaagta |
100 |
Q |
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| T |
11685472 |
catgttataagaaaatcaatattaaacactagtcatgtttatacaaaaattgtttagttatatatgtgtttatgtgtgttttaatatttatattgaagta |
11685571 |
T |
|
| Q |
101 |
cttgtacactcgtatagtattcatattcatgcaacatagttttacacatttgaaacaaaagccatacctgcttaaacatagtgctagttccagacccttg |
200 |
Q |
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| T |
11685572 |
cttgtacactcgtatagtattcatattcatgcaacatagttttacacatttgaaacaaaagccatacctgcttaaacatagtgctagttccagacccttg |
11685671 |
T |
|
| Q |
201 |
aattccaagaagaagaagcttctgagnnnnnnnctgttcaagatatttaggaactgtggtataattactagcctcgtctcttgatccatgaggctgtcca |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11685672 |
aattccaagaagaagaagcttctgagtttttttctgttcaagatatttaggaactgtggtataattactagcctcgtctcttgatccatgaggctgtcca |
11685771 |
T |
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| Q |
301 |
tgaggatagggtagagagaagagggcag |
328 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
11685772 |
tgaggatagggtagagagaagagggcag |
11685799 |
T |
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