View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4965_low_17 (Length: 321)
Name: NF4965_low_17
Description: NF4965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4965_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 11155617 - 11155898
Alignment:
| Q |
14 |
catcatcatcgatttggaagctgattttaatctgaggaccacctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11155617 |
catcatcatcgatttggaagctgattttaatctgaggaacacctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagt |
11155716 |
T |
|
| Q |
114 |
tattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgtgggtattc |
213 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||| | ||||||||||||||||| |||||| | || |||||| | ||||||| |
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| T |
11155717 |
tattttcctctcaccttcataaacatgaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattttggtattc |
11155816 |
T |
|
| Q |
214 |
cttgggattattatgtccataatccccccatgtttctccaatccaagggacaaaggaatgacctccgacaatagtaaatctt |
295 |
Q |
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| T |
11155817 |
ctagggattattgtgttcataatccccccatgagtctccaatccaagggacaaaggaatgacctccgacaattgtaaatctt |
11155898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 304
Target Start/End: Original strand, 11196064 - 11196354
Alignment:
| Q |
14 |
catcatcatcgatttggaagctgattttaatctgaggaccacctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagc |
113 |
Q |
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|||| |||||||||||||||| |||| | ||||||||| ||||||||| ||| |||||||||||||| |||||| |||| ||||||||||| ||||||| |
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| T |
11196064 |
catcgtcatcgatttggaagcggattatgatctgaggaacacctgccgcagcaggaggaatttccaacacaaatcttcctagcaagttgttgtccctagt |
11196163 |
T |
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| Q |
114 |
tattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgtgggtattc |
213 |
Q |
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| T |
11196164 |
tattttcctctcaccttcataaacatcaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattttggtattc |
11196263 |
T |
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| Q |
214 |
cttgggattattatgtccataatccccccatgtttctccaatccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttct |
304 |
Q |
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| T |
11196264 |
ctagggattattatttccataatccccccatgtttctccaatccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttct |
11196354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 101 - 304
Target Start/End: Original strand, 11160566 - 11160768
Alignment:
| Q |
101 |
tgttttccctagctattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtagg |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| | ||||||||||||||||| |||||| | || ||| |
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| T |
11160566 |
tgttttccctagttattttcctctcaccttcataaacatgaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcagg |
11160665 |
T |
|
| Q |
201 |
aatgtgggtattccttgggattattatgtccataatccccccatgtttctccaatccaagggacaaaggaatgacctccgacaatagtaaatcttgaacc |
300 |
Q |
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||| | ||||||||| ||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11160666 |
aattttggtattcctagggattattgtgttcataatcccccc-cgagtctccaatccaagggacaaaggaatgacctccgacaatagtaaatcttgaacc |
11160764 |
T |
|
| Q |
301 |
ttct |
304 |
Q |
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|||| |
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| T |
11160765 |
ttct |
11160768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 101 - 295
Target Start/End: Original strand, 11199147 - 11199341
Alignment:
| Q |
101 |
tgttttccctagctattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtagg |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||| || ||||||| | ||||||||||||||||| |||||| | || ||| |
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| T |
11199147 |
tgttttccctagttattttcctctcaccttcataaacatgaattagaatattcatgtggttgtgcaaatgtgtggtgaatacatgttccattttggcagg |
11199246 |
T |
|
| Q |
201 |
aatgtgggtattccttgggattattatgtccataatccccccatgtttctccaatccaagggacaaaggaatgacctccgacaatagtaaatctt |
295 |
Q |
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||| | ||||||||| ||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11199247 |
aattttggtattcctagggattattgtgttcataatccccccatgagtctccaatccaagggacaaaggaatgacctccgacaattgtaaatctt |
11199341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 54 - 279
Target Start/End: Original strand, 11132375 - 11132600
Alignment:
| Q |
54 |
acctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagctattttcctctcaccttcataaacatgaattaaaatattg |
153 |
Q |
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|||||||||||| || ||||||||||||||||||||||| ||||||||||| || ||| |||||| || ||||| || ||||||||||| ||||||||| |
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| T |
11132375 |
acctgccggagctgggggaatttccaaaacaaattttcctagcaagttgttccccatagttatttttctttcaccctcgtaaacatgaatcaaaatattg |
11132474 |
T |
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| Q |
154 |
atttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgtgggtattccttgggattattatgtccataatccccccatgtttctcca |
253 |
Q |
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||||||| | || |||||| |||||||| | ||||||| ||||||||| ||||||||| || || ||| | ||| || |||||||||||||||| |
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| T |
11132475 |
gtttggttatgaagatgtgttgtgaatacttgttccatgctggtaggaattaaggtattcctaggaatcattgttgacatgattcccccatgtttctcca |
11132574 |
T |
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| Q |
254 |
atccaagggacaaaggaatgacctcc |
279 |
Q |
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| T |
11132575 |
atccaagggataaaggaatgacctcc |
11132600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 11242016 - 11241960
Alignment:
| Q |
248 |
tctccaatccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttct |
304 |
Q |
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| T |
11242016 |
tctccaatccaagggacaaagaaatgacctccgacaatagtaaatcttgaaccttct |
11241960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 11169976 - 11170025
Alignment:
| Q |
94 |
agcaagttgttttccctagctattttcctctcaccttcataaacatgaat |
143 |
Q |
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||||||||||| ||| ||| ||||| ||||||||| |||||||||||||| |
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| T |
11169976 |
agcaagttgttgtccttagttatttgcctctcaccctcataaacatgaat |
11170025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 12527925 - 12527978
Alignment:
| Q |
91 |
ccaagcaagttgttttccctagctattttcctctcaccttcataaacatgaatt |
144 |
Q |
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||||||||||||||||| |||||||| | ||||| || ||||||||||||||| |
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| T |
12527925 |
ccaagcaagttgttttcgctagctatcattctctcgccctcataaacatgaatt |
12527978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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