View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4965_low_19 (Length: 271)
Name: NF4965_low_19
Description: NF4965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4965_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 13864513 - 13864718
Alignment:
| Q |
1 |
gtgcctccacctaagcagaaccaagcacatcaccacagtagtaaaagtggtttgtgcttgtcattaacattgaaacttgaaagaggtttggtatcttagc |
100 |
Q |
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| T |
13864513 |
gtgcctccacctaagcagaaccaagcacatcaccacagtagtaaaaatggtttgtgattgtcattaacattgaaacttgaaagaggtttggtatcttagc |
13864612 |
T |
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| Q |
101 |
cnnnnnnnncattccataagtccttcatttagctcatatttaatttaattaaaggagattgagtgagctcctcaatgttaaaactattggaaatacattt |
200 |
Q |
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| T |
13864613 |
caaaaaaaactttccataagtccttcatttagctcatatttaatttaattaaaggagattgagtgagctcctcaatgttaaaacttttggaaatacattt |
13864712 |
T |
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| Q |
201 |
tgttag |
206 |
Q |
| |
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||||| |
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| T |
13864713 |
agttag |
13864718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 12957543 - 12957494
Alignment:
| Q |
176 |
tgttaaaactattggaaatacattttgttaggataacttgttagttagta |
225 |
Q |
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| T |
12957543 |
tgttaaaactattggaaatacatttagttaagataacttgtttgttagta |
12957494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 255
Target Start/End: Original strand, 13864711 - 13864750
Alignment:
| Q |
216 |
ttagttagtatataagtcactttgttggttcatttctacc |
255 |
Q |
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| T |
13864711 |
ttagttagtatataagtcactttgttggttcatttgtacc |
13864750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 13873559 - 13873610
Alignment:
| Q |
116 |
ataagtccttcatttagctcatatttaatttaattaaaggagattgagtgag |
167 |
Q |
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| T |
13873559 |
ataagtccttcatttggctcatatttaatttaactaaaggaaatggagtgag |
13873610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 13871355 - 13871408
Alignment:
| Q |
172 |
tcaatgttaaaactattggaaatacattttgttaggataacttgttagttagta |
225 |
Q |
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|||||||||||||| || ||||||||||| |||| |||| |||||| ||||||| |
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| T |
13871355 |
tcaatgttaaaactgtttgaaatacatttagttaagatatcttgtttgttagta |
13871408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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