View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4965_low_2 (Length: 586)
Name: NF4965_low_2
Description: NF4965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4965_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 79 - 497
Target Start/End: Original strand, 22606492 - 22606906
Alignment:
| Q |
79 |
ggatagccaaacaaattttaagggaataaaaatacatttaagtttgaattaaattattaatagttgaattatttaaataaataagaagaagctaaaacta |
178 |
Q |
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| T |
22606492 |
ggatagccaaacaaattttaagggaataaaaatacatttaagtttgaattaaattattcatagttgaattatttaaataaataagaagaagctaaaacta |
22606591 |
T |
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| Q |
179 |
tttgaaaatgggggtaaatacaagcatatacataaaataacaatgggaagatataaacttactacaagagtgtttaaattaaattccataataa-atatt |
277 |
Q |
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| T |
22606592 |
tttgaaaatgggggtaaatacaagcatatacataaaataacaatgagaagatataaacttactctaagagtgtttgaattaattaccataataatttttt |
22606691 |
T |
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| Q |
278 |
ttgcataaaataatattcattaaaccaacatttgtttttaatggttcactaagccaacatatgaacgtttagtttgacaattagattagcaaacttgata |
377 |
Q |
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| T |
22606692 |
ttgcataaaataatattcactaaaccaacatttttttttaatgtttcactaaaccaacatatgaacgtttagtttgacaattagatt-----acttgata |
22606786 |
T |
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| Q |
378 |
atatatataaaaccctcaagaaaaattggtctcattataaattaatttggaagaaataaatttcgtaacaatattattggtgtgaagtatttatttgatt |
477 |
Q |
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|| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| || ||||||||||||||||||||| ||||| |
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| T |
22606787 |
atctatataaaaccctcaagagaaattggtctcattataaattaatttagaagaaataaatttcgcaactatgttattggtgtgaagtatttatctgatt |
22606886 |
T |
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| Q |
478 |
tgtcgataattaatgtccat |
497 |
Q |
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| T |
22606887 |
tgtagataattaatgtccat |
22606906 |
T |
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