View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4965_low_25 (Length: 226)
Name: NF4965_low_25
Description: NF4965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4965_low_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 36515370 - 36515580
Alignment:
| Q |
1 |
ctcttcatacacgaagattttaaatagcttctccattaattggtaactcctatatcatcattatgtaaaaacaattcaaaagaatgaaaaaatatagcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36515370 |
ctcttcatacacgaagattttaaatagcttctccattaattggtaactcctatatcatcattatgtaaaaacaattcaaaagaatgaaaaaatatagcat |
36515469 |
T |
|
| Q |
101 |
gacatgtaagaggttaaaactgccttcnnnnnnnntgtaagaggttaaaactcttaaatacggtttgatctcaaccacatatgtacatccaatttccaca |
200 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36515470 |
gacatgtaagaggttaaaacttccttcaaaaaaaatgtaagaggttaaaactcttaaatacggtttgatctcaaccacatatgtacatccaatttccaca |
36515569 |
T |
|
| Q |
201 |
acatcaatatc |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
36515570 |
acatcaatatc |
36515580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 36805856 - 36805675
Alignment:
| Q |
1 |
ctcttcatacacgaagattttaaatagcttctccattaattggtaactcctatatcatcattatgtaaaaacaattcaaaagaatgaaaaaatatagcat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
36805856 |
ctcttcatacacaaagattttaaatagcttctccattaagtggtaactcctatatcatcattatgtaaaaaaaattcaaaagaatgaaaaaatataacat |
36805757 |
T |
|
| Q |
101 |
gacatgtaagaggttaaaactgccttcnnnnnnnntgtaagaggttaaaactcttaaatacggtttgatctcaaccacatat |
182 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36805756 |
gacatgtaagaggttaaaacttccttcaaaaaaaatgtaagagattaaaactcttaaatatggtttgatctcaaccacatat |
36805675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University