View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4965_low_5 (Length: 540)
Name: NF4965_low_5
Description: NF4965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4965_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 13 - 522
Target Start/End: Original strand, 45305551 - 45306058
Alignment:
| Q |
13 |
aatatggcaagttcaacaaatgcagagagcaaattagttctgagttacttaagctaaatagaatccatgctcctaatgttaagaccattgatcaaataaa |
112 |
Q |
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| T |
45305551 |
aatatggcaagttcaaacaatgcagagagtaaattagttctgagttacttaagctaaatagcatccatgctcctaatgttaagaccattgatcaagtaaa |
45305650 |
T |
|
| Q |
113 |
tatcaaagagaagaaagaatcagatgaaattcgaatctagaagaaaaatattggagtcaaagagttaaggtcagatggctgaaagagggacataaaaaca |
212 |
Q |
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| T |
45305651 |
tatcaaagagaagaaagaatcagatgaaattcgaatctagaagaaaaatattggagtcaaagagttaaggtcagatggctgaaagagggatataaaaaca |
45305750 |
T |
|
| Q |
213 |
ccaagttctttcaccaaaagccttccctaagaaggaagaagaatttcatttctaaaattcatactgataaagaactgattactaataaggaggacgaaat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45305751 |
ccaagttctttcaccaaaagccttccctaagaaggaagaagaatttcatttctaaaattcatactgataaagaactgattactaataaggaggaagaaat |
45305850 |
T |
|
| Q |
313 |
tcatacaatgtttatgacatatttatataacattgtctctgtaagagaggtttagtggaagcatatgtttcaggaagctggtcaaatcattgacgttttg |
412 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45305851 |
tcatacaatgtttatgacatatt--tatgacattgtctctgtaagagaggtttagtggaagcatatgtttcaggaagctggtcaaatcattgacgttttg |
45305948 |
T |
|
| Q |
413 |
ttcaaatatcatcttcatttatagagtcattttaaagattttgatgttgtttagaattgcattgttgctctttaattttannnnnnnnaaatatatcaaa |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45305949 |
ttcaaatatcatcttcatttatagagtcattttaaagattttgatgttgtttagaattgcattgttgctctttaattttattttttttaaatatatcaaa |
45306048 |
T |
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| Q |
513 |
tatagacttt |
522 |
Q |
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| T |
45306049 |
tatagacttt |
45306058 |
T |
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