View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4965_low_7 (Length: 494)
Name: NF4965_low_7
Description: NF4965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4965_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 311 - 472
Target Start/End: Complemental strand, 27099308 - 27099144
Alignment:
| Q |
311 |
gtagcaaaatttatattttcttgtactgataggaaaatgcattattttacaaaaaattgctagggtccactttcgaatatttttatgaaatggaacacaa |
410 |
Q |
| |
|
|||||||||||||||| |||||||| |||||| ||||| ||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27099308 |
gtagcaaaatttatatgttcttgtagtgatagcaaaatccattattttacaaaaaattgcaatggtccacttttgaatatttttatgaaatggaacacaa |
27099209 |
T |
|
| Q |
411 |
cttcttatagct---caacctctatatttattcctcaaactaccaccataccaattaacatatca |
472 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27099208 |
cttcttataactcaacaacctctatatttattcctcaaactaccaccaaaccaattaacatatca |
27099144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 27099639 - 27099436
Alignment:
| Q |
11 |
cagagattgtaaatcggagatgtaaattagtgaatcagaagatggtgaattagagatcggagatagcaaatcgatgaatcagatatggtgaatcggagat |
110 |
Q |
| |
|
|||||||||| |||||| ||||||| | ||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||| ||||| |
|
|
| T |
27099639 |
cagagattgtgaatcggggatgtaagtcagtgaatcagaagattgtgaattagagatcggagacaacaaatcgatgaatcagatatggtgaatcagagat |
27099540 |
T |
|
| Q |
111 |
cgaacatgatgaatctgtgaactggagatggcaactcgttgatcggagtcggtgagacggtgatcggcgatgaagcttcagtctggggcggtgaatgtaa |
210 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| || ||||||| |||||||||| |||| |||||||||| |||| |||||||||||| |
|
|
| T |
27099539 |
cgaacatggtgaatccgtgaactggagatgg-------------tgactcggtgaaacggtgatcgacgataaagcttcagtttgggacggtgaatgtaa |
27099453 |
T |
|
| Q |
211 |
tataagctttgtcaaac |
227 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
27099452 |
tataagctttatcaaac |
27099436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 339 - 452
Target Start/End: Complemental strand, 27106272 - 27106160
Alignment:
| Q |
339 |
ataggaaaatgcattattttacaaaaaattgctagggtccactttcgaatatttttatgaaatggaacacaacttcttatagctcaacctctatatttat |
438 |
Q |
| |
|
|||| ||||| |||||||||||||||| |||| | |||||| ||| ||||||||||||||||| ||||||||||||||||| |||| ||||||||| | |
|
|
| T |
27106272 |
atagcaaaatccattattttacaaaaagttgcaatggtccatttt-gaatatttttatgaaatcgaacacaacttcttataattcaatctctatattctt |
27106174 |
T |
|
| Q |
439 |
tcctcaaactacca |
452 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
27106173 |
tcctcaagctacca |
27106160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University