View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4966-Insertion-1 (Length: 1043)
Name: NF4966-Insertion-1
Description: NF4966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4966-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 783; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 783; E-Value: 0
Query Start/End: Original strand, 186 - 1039
Target Start/End: Original strand, 8057729 - 8058586
Alignment:
| Q |
186 |
atgtcataataatctggtgttccaccgaaagataagtaaagtctgaccaaagattgtttcagttaagattcgaaatcaaagttttaagtttgatttgtga |
285 |
Q |
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| T |
8057729 |
atgtcataataatctggtgttccactgaaagataagtaaagtctgaccaaagattgtttcagttaagattcgaaatcaaagttttaagtttgatttgtga |
8057828 |
T |
|
| Q |
286 |
acaaagatgaaatcactaagtagtgtaggacttggtttgagcattgtgtttggttgccttttattggctttagtagctgaagtttactatttgttatggt |
385 |
Q |
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| T |
8057829 |
acaaagatgaaatcactaagtagtgtaggacttggtttaagcattgtttttggttgccttttattggctttagtagctgaagtttactacttgttatggt |
8057928 |
T |
|
| Q |
386 |
ggaagaagaaaataatcaaaagagaaattgaaaatgactatggcaatggcaaccctttgaaagagcttttctatatgttttgttggaaaagaccatcaac |
485 |
Q |
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| T |
8057929 |
ggaagaagaaaataatcaaaagagaaattgaaaatgactatggcaatggcaaccctttgaaagagcttttctatatgttttgttggaaaagaccatcaac |
8058028 |
T |
|
| Q |
486 |
ttctttgagacaaacaggttttactccaccggagctttgttcatcgatgagaataaatgacaattttgtccatgaccctcaagtacaaactagcaaagag |
585 |
Q |
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| T |
8058029 |
ttctttgagacaaacaggttttactccaccggagctttgttcatcgatgagaataaatgacaattttgtccatgaccctcaagtacagaccagcaaagag |
8058128 |
T |
|
| Q |
586 |
tttcttttcaaaccctatggcgaagatggaatcgacgcagattacatgatgcaacatcatcacgacggccttttaggtcatccgagattcttgttcacga |
685 |
Q |
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| T |
8058129 |
tttcttttcaaaccctatggcgaagatgtaatcgacgcagattacatgatgcaacatcatcacgacggccttttaggtcatccgagattcttgttcacaa |
8058228 |
T |
|
| Q |
686 |
tagttgaagaatcaaaagaggatttagaatccgaagatggtaaatgtggaaaggattcaagaggtagaagcttaggtgatttgttagatgtggaaacacc |
785 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8058229 |
tagttgaagaatcaaaagaggatttagaatctgaagacggtaaatgtggaaaggattcaagaggtagaagcttaggtgatctgttagatgtggaaacacc |
8058328 |
T |
|
| Q |
786 |
ttatttgacacctatagcatctccacattttttcactcctatgaattgtagtccttattgtagcccttataatcaacatggattcaaccctctttttgaa |
885 |
Q |
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| T |
8058329 |
ttatttgacacctatagcatctccacattttttcactcctatgaattgtagtccttattgtagcccttataatcaacatggattcaaccctctttttgaa |
8058428 |
T |
|
| Q |
886 |
tcaacaactgatgcagagttcaatagattaaagtcatcgcctcctccgaaattcaagttcttacaagaagcagaagagaaacttagaag-aaaatgc-ag |
983 |
Q |
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| T |
8058429 |
tcaacaactgatgcagagttcaatagattaaagtcatcgcctcctccgaaattcaagttcttacaagaagcagaagagaaacttagaagaaaaatgcaag |
8058528 |
T |
|
| Q |
984 |
atgaca--cagggtattaatggaaatgaagttgataattctctcattacaataattgt |
1039 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8058529 |
atgacaacaagggtattaatggaaatgaagttgataattctctcattacaataattgt |
8058586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 7 - 185
Target Start/End: Original strand, 8057520 - 8057698
Alignment:
| Q |
7 |
agagggttcagatttagacaaagtaaattaccaagtaagctttttcatttactcttgaatatgtgtaattctcattgttaaaatttggttgtaattattc |
106 |
Q |
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| T |
8057520 |
agagggttcagatttagacaaagtaaattaccaagtaagctttttcatttactcttgaatatgtgtaattctcattgttaaaatttggttgtaattattc |
8057619 |
T |
|
| Q |
107 |
ttttttggtattcaattggtcaattagttatgactatctagattagatgttaattattttggccattgaacattgtttt |
185 |
Q |
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| T |
8057620 |
ttttttggtattcaattggtcaattagttatgactatctagattagatgttaattattttggccactgaacattgtttt |
8057698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 880 - 967
Target Start/End: Complemental strand, 24777325 - 24777239
Alignment:
| Q |
880 |
tttgaatcaacaactgatgcagagttcaatagattaaagtcatcgcctcctccgaaattcaagttcttacaagaagcagaagagaaac |
967 |
Q |
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| T |
24777325 |
tttgaatcgacaactgatgcagagttccatagattaaagtcatcacct-ctccaaaattcaagttcttacaagaagcaaaagagaaac |
24777239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 732 - 801
Target Start/End: Complemental strand, 10429109 - 10429040
Alignment:
| Q |
732 |
tggaaaggattcaagaggtagaagcttaggtgatttgttagatgtggaaacaccttatttgacacctata |
801 |
Q |
| |
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|||||||||||||| |||||||||||||||| ||||||||||| || |||||||||||||||||| |||| |
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| T |
10429109 |
tggaaaggattcaataggtagaagcttaggttatttgttagatttgaaaacaccttatttgacacttata |
10429040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 584 - 636
Target Start/End: Complemental strand, 10429215 - 10429163
Alignment:
| Q |
584 |
agtttcttttcaaaccctatggcgaagatggaatcgacgcagattacatgatg |
636 |
Q |
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| T |
10429215 |
agtttctttttgaaccctatggtgaagatggaatcgaagcagaatacatgatg |
10429163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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