View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4966-Insertion-10 (Length: 262)
Name: NF4966-Insertion-10
Description: NF4966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4966-Insertion-10 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 44494873 - 44495128
Alignment:
| Q |
7 |
aaaattaactaaattatagtataaaatataaaaaagagaatagtgtattaacatttaacggtgcagttaaatattacccctggcctttgtaatgctataa |
106 |
Q |
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| T |
44494873 |
aaaattaactaaattatagtataaaatataaaaaagagaatagtgtattaacatttaacggtgcagttaaatattacccctggcctttgtaatgctataa |
44494972 |
T |
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| Q |
107 |
ctaattaaaacttggaatatctacacaatttaagtgttccccctttctcttcatttgaagcacaaaaaagggttacaagtaattagtaatcaaactaaac |
206 |
Q |
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| T |
44494973 |
ctaattaaaacttggaatatctacacaatttaagtgttcctcctttctcttcatttgaagcacaaaaaagggttacaagtaattagtaaacaaactaaac |
44495072 |
T |
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| Q |
207 |
catgaaagctcttagcttaatcctcatattctccatcatcactgccttctcacatg |
262 |
Q |
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| T |
44495073 |
catgaaagctcttagcttaatcctcatattctccatcatcactgccttctcacatg |
44495128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 122 - 262
Target Start/End: Original strand, 44470338 - 44470480
Alignment:
| Q |
122 |
aatatctacacaatttaagtgttccccctttctcttcatttgaagcacaaaaaagggttacaagtaattagtaatcaaa---ctaaaccatgaaagctct |
218 |
Q |
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| T |
44470338 |
aatatctaaacaatttaggtgttcctcttttctcttctcttggagcacaaaaaagg-ttacaagtaattaataaccgaaagactaaaccatgaaatctct |
44470436 |
T |
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| Q |
219 |
tagcttaatcctcatattctccatcatcactgccttctcacatg |
262 |
Q |
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| T |
44470437 |
taccttaatcttcacattctccatcattgctaccttctcacatg |
44470480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 44488777 - 44488837
Alignment:
| Q |
202 |
taaaccatgaaagctcttagcttaatcctcatattctccatcatcactgccttctcacatg |
262 |
Q |
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| T |
44488777 |
taaactatgaaaactcttaccttaatcttcacattctccatcattgttgccttctcacatg |
44488837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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