View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4966-Insertion-2 (Length: 1016)

Name: NF4966-Insertion-2
Description: NF4966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4966-Insertion-2
NF4966-Insertion-2
[»] chr5 (8 HSPs)
chr5 (7-765)||(40518266-40519019)
chr5 (821-1010)||(40519066-40519257)
chr5 (900-1010)||(25493786-25493898)
chr5 (901-1010)||(30735350-30735461)
chr5 (901-1010)||(3040289-3040400)
chr5 (902-1010)||(24402009-24402123)
chr5 (901-1010)||(30700899-30701008)
chr5 (901-976)||(30071739-30071816)
[»] chr7 (9 HSPs)
chr7 (900-1010)||(21882798-21882910)
chr7 (897-1011)||(20125554-20125670)
chr7 (900-1010)||(46297580-46297692)
chr7 (900-1010)||(24250483-24250595)
chr7 (900-976)||(8123658-8123736)
chr7 (902-1010)||(22631449-22631559)
chr7 (900-987)||(23611801-23611890)
chr7 (562-644)||(25983955-25984037)
chr7 (957-1010)||(46413772-46413828)
[»] chr2 (11 HSPs)
chr2 (900-1010)||(13716739-13716851)
chr2 (901-1010)||(20142936-20143047)
chr2 (901-1006)||(38320233-38320340)
chr2 (901-1010)||(37714391-37714502)
chr2 (905-1011)||(3167868-3167976)
chr2 (900-989)||(32976072-32976163)
chr2 (900-997)||(37899545-37899644)
chr2 (900-1010)||(19945753-19945865)
chr2 (925-1010)||(35457394-35457479)
chr2 (191-248)||(41837233-41837290)
chr2 (346-389)||(41837385-41837428)
[»] chr3 (7 HSPs)
chr3 (901-1010)||(34905814-34905925)
chr3 (900-1011)||(1632776-1632888)
chr3 (957-1011)||(18271991-18272045)
chr3 (937-1010)||(26442954-26443028)
chr3 (900-1010)||(48897709-48897821)
chr3 (959-1007)||(40840680-40840728)
chr3 (900-1010)||(45852963-45853075)
[»] chr1 (9 HSPs)
chr1 (910-1010)||(10061569-10061671)
chr1 (900-1010)||(35412993-35413105)
chr1 (901-1011)||(43537173-43537288)
chr1 (900-1011)||(21540041-21540154)
chr1 (900-1010)||(29657331-29657443)
chr1 (900-1011)||(23906634-23906747)
chr1 (957-1010)||(11470050-11470103)
chr1 (910-1010)||(35149693-35149795)
chr1 (901-947)||(9113526-9113574)
[»] chr4 (9 HSPs)
chr4 (905-1010)||(19482490-19482597)
chr4 (901-1010)||(41545383-41545494)
chr4 (900-1010)||(37762772-37762886)
chr4 (904-1010)||(42504223-42504328)
chr4 (925-1010)||(25817658-25817744)
chr4 (925-1013)||(5288515-5288604)
chr4 (958-1011)||(29065306-29065359)
chr4 (900-990)||(13218423-13218514)
chr4 (899-988)||(16528529-16528620)
[»] chr6 (5 HSPs)
chr6 (906-1010)||(32871782-32871888)
chr6 (901-1010)||(6784731-6784842)
chr6 (900-1010)||(2130521-2130633)
chr6 (958-1010)||(6519267-6519319)
chr6 (900-1010)||(28867152-28867264)
[»] chr8 (8 HSPs)
chr8 (901-1010)||(24068146-24068256)
chr8 (900-1011)||(38585116-38585229)
chr8 (901-1010)||(29414352-29414461)
chr8 (898-936)||(26415528-26415567)
chr8 (901-1010)||(5686319-5686437)
chr8 (899-975)||(29543676-29543754)
chr8 (903-947)||(35393710-35393755)
chr8 (898-938)||(36947329-36947370)


Alignment Details
Target: chr5 (Bit Score: 590; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 7 - 765
Target Start/End: Original strand, 40518266 - 40519019
Alignment:
Q  7 aatttctcccttgctagtttgatggtgtcctc--atgcaaggtttggaatcatgatttggctcatcaaattttcagcctagctattgcctctattattat 104  Q
    ||||| |||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  40518266 aatttttcccttgctagtttgacggtgtcctctcatgcaaggtttggaatcatgatttggctcatcaaattttcagcctagctattgcttatattattat 40518365  T
Q  105 gcgactcctctgtttgaacagaggtacttgatgacaaactgattcggaaagtcgaaaaggatgtgaagtattccgtaaaaagtgtgtacatgctctgtat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40518366 gcgactcctctgtttgaacagaggtacttgatgacaaactgattcggaaagtcgaaaaggatgtgaagtattccgtaaaaagtgtgtacatgctctgtat 40518465  T
Q  205 ggagggtttggtggacatatctcatcttcaaaggccatgcttcttgtccgacattttgcatttaaacatcccttcgaaattaaaaaatttagtttggcaa 304  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  40518466 ggagggtttggtggacatatctcatcttcaaaggccatgcttctggtccgacatttggcatttaaacatccctccgaaattaaaaaatttagtttggcaa 40518565  T
Q  305 atgtgtcgtcgttgtttgcccacacgagtttacttgtaggataaatgtattcaataccctacaaattgcgttagttgtgattcttctgttgatgatttgg 404  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40518566 atgtgtcgtcgttgtttgcccacacgagtttgcttgtaggataaatgtattcaataccctacaaattgcgttagttgtgattcttctgttgatgatttgg 40518665  T
Q  405 atcatgtgnnnnnnnactt-gtccttttgcaatgcaaggttggtttacaattggtttatagaacaacattcaacatattgtcaacaaaaccggtacgacc 503  Q
    ||||||||       |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40518666 atcatgtgtttttttacttagttcttttgcaatgcaaggttggtttacaattggtttatagaacaacattcaacatattgtcaacaaaaccggtacgacc 40518765  T
Q  504 tcataagtaatctttttgtagtcataacatctcacggccagactttgcaactcataccgttagtttgttttagattttatggaaggaccgcaatctcaaa 603  Q
    |||||| |||| |||||||||| | ||| |||||| ||| |||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||    
T  40518766 tcataattaatttttttgtagttagaacgtctcac-gccggactttgcaactcatatcgttagtttg-tttggattttatggaaggaccgcaatctcaaa 40518863  T
Q  604 atgtgggatgatgttacatagacggttgctcaaatagttgacaatgacatagctcattatattgttggaggattggactcataagtaaacgcagccacta 703  Q
     |||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40518864 gtgtgggatgatgttacatagacggttgctcaaatagt------tgacatagctcattatattgttggaggattggactcataagtaaacgcagccacta 40518957  T
Q  704 acgttgcaatattacaannnnnnnaggtccatatgtactaacttgcagataccattagcaag 765  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  40518958 acgttgcaatattacaatttttttaggtccatatgtactaacttgcagataccattagcaag 40519019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 821 - 1010
Target Start/End: Original strand, 40519066 - 40519257
Alignment:
Q  821 actaacaaatgttagcgagtcatatacgaagttatagtaaaa-gaaatttatatacgagcttaatgctcgataattgcttagagcattgctatttatcta 919  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40519066 actaacaaatgttagcaagtcatatacgaagttatagtaaaaagaaatttatatacgagcttaatgttcgataattgcttagagcattgctatttatcta 40519165  T
Q  920 gagag-ttttatcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaatgatgtgtaattaa 1010  Q
    ||||| ||||||||||||||||||||||||| ||| || ||||||||||||||||||||   |||||| | ||| ||||||||||||||||||    
T  40519166 gagagtttttatcaagaatttattaagaataagtctcaaccaattaaatttgttatttgatggaaatc-agggaggtaatgatgtgtaattaa 40519257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 900 - 1010
Target Start/End: Original strand, 25493786 - 25493898
Alignment:
Q  900 agagcattgctatttatctagagagtttt-atcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaat 997  Q
    ||||||||||||||||||||||||||||| |||||||||| || ||||| | ||| || ||||||||||||||| |||| |||||||||||||| |||||    
T  25493786 agagcattgctatttatctagagagtttttatcaagaattgatcaagaaaatgtctcagccaattaaatttgttctttgtcagaaatcaaaggaggtaat 25493885  T
Q  998 gatgtgtaattaa 1010  Q
    | |||||||||||    
T  25493886 ggtgtgtaattaa 25493898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 901 - 1010
Target Start/End: Complemental strand, 30735461 - 30735350
Alignment:
Q  901 gagcattgctatttatctagagagtttt-atcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaatg 998  Q
    ||||||||||||||||||||| |||||| || |||||| ||| ||||| | ||| ||  ||||||||||||||||||||| |||||||| ||| ||||||    
T  30735461 gagcattgctatttatctagatagtttttattaagaatatatcaagaaaatgtctcaatcaattaaatttgttatttggcggaaatcaagggaggtaatg 30735362  T
Q  999 atgtgtaattaa 1010  Q
     || ||||||||    
T  30735361 ctgggtaattaa 30735350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 901 - 1010
Target Start/End: Complemental strand, 3040400 - 3040289
Alignment:
Q  901 gagcattgctatttatctagagagtttt-atcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaatg 998  Q
    |||||||| |||||| |||||||||||| ||||||||||||| ||||| | ||| ||  |||||||||||||||| |||   ||||||| ||| ||||||    
T  3040400 gagcattgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggtgaaaatcaagggaggtaatg 3040301  T
Q  999 atgtgtaattaa 1010  Q
     |||||||||||    
T  3040300 gtgtgtaattaa 3040289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 902 - 1010
Target Start/End: Original strand, 24402009 - 24402123
Alignment:
Q  902 agcattgctatttatctagagag----ttttatcaagaatttattaagaataggtc-cacccaattaaatttgttatttgg-cagaaat-caaaggaagt 994  Q
    ||||||||||||||| |||||||    ||||||||||||||||| ||||| || || || |||| |||||||||||||||| | ||||| |||||| ||     
T  24402009 agcattgctatttatttagagagttttttttatcaagaatttatcaagaaaagatctcaaccaaataaatttgttatttggtcggaaatacaaagg-agc 24402107  T
Q  995 aatgatgtgtaattaa 1010  Q
    ||||||||||||||||    
T  24402108 aatgatgtgtaattaa 24402123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 901 - 1010
Target Start/End: Complemental strand, 30701008 - 30700899
Alignment:
Q  901 gagcattgctatttatctagagagttttatcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaatga 999  Q
    ||||||| ||||||||||||||  ||||||||| ||| ||||||||| | ||| ||  ||||||||||||||||||| |  |||| || ||| ||||||     
T  30701008 gagcatttctatttatctagagt-ttttatcaaaaatatattaagaaaatgtctcaatcaattaaatttgttatttgacgaaaattaagggaggtaatgt 30700910  T
Q  1000 tgtgtaattaa 1010  Q
    |||||||||||    
T  30700909 tgtgtaattaa 30700899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 901 - 976
Target Start/End: Original strand, 30071739 - 30071816
Alignment:
Q  901 gagcattgctatttatctagagag-ttttatcaagaatttattaagaataggtc-cacccaattaaatttgttatttg 976  Q
    ||||||||||||||||||| |||| ||||||| ||||||||  ||||| ||||| || |||||||||||| |||||||    
T  30071739 gagcattgctatttatctaaagagtttttatctagaatttaacaagaaaaggtctcaaccaattaaatttattatttg 30071816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 3e-23; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 900 - 1010
Target Start/End: Complemental strand, 21882910 - 21882798
Alignment:
Q  900 agagcattgctatttatctagagag-ttttatcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaat 997  Q
    ||||||||||||||||||||||||| |||||| ||||||| |||||||| || || || |||||||||||||||||||| | |||||||| ||| |||||    
T  21882910 agagcattgctatttatctagagagattttatgaagaattgattaagaaaagatctcagccaattaaatttgttatttgccggaaatcaagggaggtaat 21882811  T
Q  998 gatgtgtaattaa 1010  Q
    | |||||||||||    
T  21882810 ggtgtgtaattaa 21882798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 897 - 1011
Target Start/End: Original strand, 20125554 - 20125670
Alignment:
Q  897 cttagagcattgctatttatctagagag-ttttatcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagt 994  Q
    ||||||||||| |||||||||||||||| |||||||||||||| || ||||| | ||  || |||||||||||||||| ||| ||||||| |||| |  |    
T  20125554 cttagagcatttctatttatctagagaggttttatcaagaattgatcaagaaaatgtgtcagccaattaaatttgttacttgtcagaaattaaagaagat 20125653  T
Q  995 aatgatgtgtaattaaa 1011  Q
    |||| ||||||||||||    
T  20125654 aatggtgtgtaattaaa 20125670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 900 - 1010
Target Start/End: Original strand, 46297580 - 46297692
Alignment:
Q  900 agagcattgctatttatctagagag-ttttatcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaat 997  Q
    |||||||| |||||||||||||||| ||||||||||||||||| ||||| | ||| || ||| || ||||||||||||| |  ||||||| |||  ||||    
T  46297580 agagcattactatttatctagagagtttttatcaagaatttatcaagaaaatgtctcagccattttaatttgttatttgtcgaaaatcaagggagttaat 46297679  T
Q  998 gatgtgtaattaa 1010  Q
    | |||||||||||    
T  46297680 ggtgtgtaattaa 46297692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 900 - 1010
Target Start/End: Complemental strand, 24250595 - 24250483
Alignment:
Q  900 agagcattgctatttatctagagag-ttttatcaagaatttattaagaataggtcc-acccaattaaatttgttatttggcagaaatcaaaggaagtaat 997  Q
    ||||||||||||| |||||| |||| |||||||||||||| || ||||| || ||  | |||||| ||||||||||||| | |||||||| ||| |||||    
T  24250595 agagcattgctatctatctaaagagattttatcaagaattgatcaagaaaagatcttatccaatttaatttgttatttgtcggaaatcaagggaggtaat 24250496  T
Q  998 gatgtgtaattaa 1010  Q
    | | |||||||||    
T  24250495 ggtttgtaattaa 24250483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 900 - 976
Target Start/End: Original strand, 8123658 - 8123736
Alignment:
Q  900 agagcattgctatttatctagagag-ttttatcaagaatttattaagaataggtc-cacccaattaaatttgttatttg 976  Q
    ||||||||||||||||||||||||| |||||||| ||||| || ||||| | ||| ||  |||||||||||||||||||    
T  8123658 agagcattgctatttatctagagagattttatcatgaattgatcaagaaaatgtctcagtcaattaaatttgttatttg 8123736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 902 - 1010
Target Start/End: Original strand, 22631449 - 22631559
Alignment:
Q  902 agcattgctatttatctagagag-ttttatcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaatga 999  Q
    ||||||| |||||||||| |||  |||||| ||||||| || ||||| || || || |||||||||||||||||||| | ||||||||||||  ||||      
T  22631449 agcattgttatttatctaaagatattttattaagaattgatcaagaaaagatctcagccaattaaatttgttatttgtcggaaatcaaaggagataatag 22631548  T
Q  1000 tgtgtaattaa 1010  Q
    |||||||||||    
T  22631549 tgtgtaattaa 22631559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 900 - 987
Target Start/End: Complemental strand, 23611890 - 23611801
Alignment:
Q  900 agagcattgctatttatctagagagtttt-atcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaa 987  Q
    |||| ||| |||||||||||||||||||| || |||||||||| ||||| | ||| || | |||||||||||||||||| | ||||||||    
T  23611890 agagaattactatttatctagagagtttttattaagaatttatcaagaaaatgtctcaacaaattaaatttgttatttgacggaaatcaa 23611801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 562 - 644
Target Start/End: Original strand, 25983955 - 25984037
Alignment:
Q  562 gttagtttgttttagattttatggaaggaccgcaatctcaaaatgtgggatgatgttacatagacggttgctcaaatagttga 644  Q
    ||||| ||||||| || |||||||||| ||| ||| |||||| |||| |||||||||||| ||||   ||||||| |||||||    
T  25983955 gttagcttgttttggagtttatggaagtaccacaacctcaaagtgtgagatgatgttacagagacaactgctcaagtagttga 25984037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 957 - 1010
Target Start/End: Complemental strand, 46413828 - 46413772
Alignment:
Q  957 ccaattaaatttgttatttgg---cagaaatcaaaggaagtaatgatgtgtaattaa 1010  Q
    |||||||||||||||||||||   | |||||||| ||| ||||||||||||||||||    
T  46413828 ccaattaaatttgttatttggtggcggaaatcaagggaggtaatgatgtgtaattaa 46413772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 3e-23; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 900 - 1010
Target Start/End: Complemental strand, 13716851 - 13716739
Alignment:
Q  900 agagcattgctatttatctagagagtttt-atcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaat 997  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||| | ||| || |||||||||||||| |||||||  ||||||||||| |||||    
T  13716851 agagcattgctatttatctagagagtttttatcaagaatttatcaagaaaaagtctcaaccaattaaatttgtgatttggcgaaaatcaaaggaggtaat 13716752  T
Q  998 gatgtgtaattaa 1010  Q
      |||||||||||    
T  13716751 agtgtgtaattaa 13716739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 901 - 1010
Target Start/End: Original strand, 20142936 - 20143047
Alignment:
Q  901 gagcattgctatttatctagagagtttt-atcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaatg 998  Q
    |||||||| ||||||||||||||||||| ||||||||||||| ||||| | ||| || |||||||||||| ||||||||| |||||||| | | ||||||    
T  20142936 gagcattgttatttatctagagagtttttatcaagaatttatcaagaaaaagtctcaaccaattaaatttattatttggcggaaatcaaggaaggtaatg 20143035  T
Q  999 atgtgtaattaa 1010  Q
    ||||||||||||    
T  20143036 atgtgtaattaa 20143047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 901 - 1006
Target Start/End: Complemental strand, 38320340 - 38320233
Alignment:
Q  901 gagcattgctatttatctagagagtttt-atcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaatg 998  Q
    |||||| | ||||||||||||||||||| ||||||||||||| ||||| || |  || |||||||||||||||||||||  |||||||||||| ||||||    
T  38320340 gagcatcgttatttatctagagagtttttatcaagaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaaaggaggtaatg 38320241  T
Q  999 atgtgtaa 1006  Q
    ||||||||    
T  38320240 atgtgtaa 38320233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 901 - 1010
Target Start/End: Original strand, 37714391 - 37714502
Alignment:
Q  901 gagcattgctatttatctagagagtttt-atcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaatg 998  Q
    |||||||||||||||||||||||||||| |||||  |||||| ||||| ||||  || ||||||||||||||||||||   ||||||||||||  |||||    
T  37714391 gagcattgctatttatctagagagtttttatcaatgatttatcaagaaaaggtatcaaccaattaaatttgttatttgatggaaatcaaaggagataatg 37714490  T
Q  999 atgtgtaattaa 1010  Q
     |||||||||||    
T  37714491 gtgtgtaattaa 37714502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 905 - 1011
Target Start/End: Original strand, 3167868 - 3167976
Alignment:
Q  905 attgctatttatctagagagtttt-atcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaatgatgt 1002  Q
    |||||||||||| || | |||||| || |||||||| ||||||| ||||| || |||||||||||| ||||||| | |||||||||| | ||||||||||    
T  3167868 attgctatttatttaaaaagtttttattaagaatttgttaagaaaaggtctcaaccaattaaatttattatttgtcggaaatcaaagaaggtaatgatgt 3167967  T
Q  1003 gtaattaaa 1011  Q
    |||||||||    
T  3167968 gtaattaaa 3167976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 900 - 989
Target Start/End: Complemental strand, 32976163 - 32976072
Alignment:
Q  900 agagcattgctatttatctagagag-ttttatcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaag 989  Q
    |||||| |||||||||||||||||| |||||||||||||| || ||||| | ||| || |||||||||||||||||||| | ||||||||||    
T  32976163 agagcaatgctatttatctagagagattttatcaagaattgatcaagaaaatgtctcaaccaattaaatttgttatttgtcggaaatcaaag 32976072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 900 - 997
Target Start/End: Complemental strand, 37899644 - 37899545
Alignment:
Q  900 agagcattgctatttatctagagag-ttttatcaagaatttattaagaatagg-tccacccaattaaatttgttatttggcagaaatcaaaggaagtaat 997  Q
    ||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||| | || |||||||||||||| ||||| |  ||||||||||| |||||    
T  37899644 agagcattgctatttatctagagagtttttatcaaaaatttatcaagaaaaggtttcaaccaattaaatttgtgatttgtcgaaaatcaaaggaggtaat 37899545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 900 - 1010
Target Start/End: Complemental strand, 19945865 - 19945753
Alignment:
Q  900 agagcattgctatttatctagagag-ttttatcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaat 997  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||| || | ||| |   ||||||||||||||||||| | ||||| || ||| |||||    
T  19945865 agagcattgctatttatttagagagtttttattaagaatttattaaaaaaatgtctcggtcaattaaatttgttatttgacggaaattaagggaggtaat 19945766  T
Q  998 gatgtgtaattaa 1010  Q
    | |||||||||||    
T  19945765 ggtgtgtaattaa 19945753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 925 - 1010
Target Start/End: Original strand, 35457394 - 35457479
Alignment:
Q  925 ttttatcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaatgatgtgtaattaa 1010  Q
    ||||||||||||||||| ||||| ||||  ||  ||||||||||| |||||| || |||||||||||| |||||| |||||||||||    
T  35457394 ttttatcaagaatttat-aagaaaaggtttcaatcaattaaatttattatttagcggaaatcaaaggaggtaatggtgtgtaattaa 35457479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 41837233 - 41837290
Alignment:
Q  191 tacatgctctgtatggagggtttggtggacatatctcatcttcaaaggccatgcttct 248  Q
    |||||||| |||||||||||||||| |||||  |||||||||||||||| | ||||||    
T  41837233 tacatgctttgtatggagggtttggcggacacctctcatcttcaaaggctaggcttct 41837290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 41837385 - 41837428
Alignment:
Q  346 taaatgtattcaataccctacaaattgcgttagttgtgattctt 389  Q
    ||||||| |||||| |||||||||||| ||||||||||||||||    
T  41837385 taaatgttttcaatgccctacaaattgtgttagttgtgattctt 41837428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 1e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 901 - 1010
Target Start/End: Original strand, 34905814 - 34905925
Alignment:
Q  901 gagcattgctatttatctagagag-ttttatcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaatg 998  Q
    ||||||||||||||||||||| || |||||||||||||| |||||||| | ||| || ||| |||||||||||||||| || ||||||||||| ||||||    
T  34905814 gagcattgctatttatctagatagattttatcaagaattgattaagaaaatgtctcagccagttaaatttgttatttgtcaaaaatcaaaggaggtaatg 34905913  T
Q  999 atgtgtaattaa 1010  Q
    |||| |||||||    
T  34905914 atgtataattaa 34905925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 900 - 1011
Target Start/End: Original strand, 1632776 - 1632888
Alignment:
Q  900 agagcattgctatttatctagagagtttt-atcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaat 997  Q
    ||||| |||||||||||||||||| |||| ||||| |||| || ||||| | ||| || | ||||||||||||||||| || |||||||||||| |||||    
T  1632776 agagctttgctatttatctagagaatttttatcaaaaatt-atcaagaaaatgtctcaactaattaaatttgttattttgcggaaatcaaaggaggtaat 1632874  T
Q  998 gatgtgtaattaaa 1011  Q
    | ||||||||||||    
T  1632875 ggtgtgtaattaaa 1632888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 957 - 1011
Target Start/End: Complemental strand, 18272045 - 18271991
Alignment:
Q  957 ccaattaaatttgttatttggcagaaatcaaaggaagtaatgatgtgtaattaaa 1011  Q
    |||||||||||||||||||||| |||||||| ||| |||||| ||||||||||||    
T  18272045 ccaattaaatttgttatttggcggaaatcaatggaggtaatggtgtgtaattaaa 18271991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 937 - 1010
Target Start/End: Original strand, 26442954 - 26443028
Alignment:
Q  937 tttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaatgatgtgtaattaa 1010  Q
    ||||| ||||| ||||| || |||||||||||||||||||||| |||||||| ||| |||||| |||||||||||    
T  26442954 tttatcaagaaaaggtctcaaccaattaaatttgttatttggcggaaatcaagggaggtaatggtgtgtaattaa 26443028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 900 - 1010
Target Start/End: Complemental strand, 48897821 - 48897709
Alignment:
Q  900 agagcattgctatttatctagagag-ttttatcaagaatttattaagaata-ggtccacccaattaaatttgttatttggcagaaatcaaaggaagtaat 997  Q
    ||||||||||||||||||||||||| |||||||||||||| || || || | | | || | | |||||||||||||||| |  ||||||| |||| ||||    
T  48897821 agagcattgctatttatctagagagattttatcaagaattaatcaaaaaaatgtttcagcaagttaaatttgttatttgtcgaaaatcaatggaaataat 48897722  T
Q  998 gatgtgtaattaa 1010  Q
    | |||||||||||    
T  48897721 ggtgtgtaattaa 48897709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 959 - 1007
Target Start/End: Complemental strand, 40840728 - 40840680
Alignment:
Q  959 aattaaatttgttatttggcagaaatcaaaggaagtaatgatgtgtaat 1007  Q
    |||||||||| ||||||||| |||||||||||| |||||||||| ||||    
T  40840728 aattaaatttattatttggcggaaatcaaaggaggtaatgatgtataat 40840680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 900 - 1010
Target Start/End: Complemental strand, 45853075 - 45852963
Alignment:
Q  900 agagcattgctatttatctagagag-ttttatcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaat 997  Q
    ||||||||| |||||||||| |||| |||||||||||||| || ||||| | ||| || |||||||||||| |||||||   | |||||| |||  ||||    
T  45853075 agagcattgttatttatctatagagattttatcaagaattaatcaagaaaaagtctcaaccaattaaatttattatttgcttgcaatcaagggagataat 45852976  T
Q  998 gatgtgtaattaa 1010  Q
    ||| |||||||||    
T  45852975 gatatgtaattaa 45852963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 4e-22; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 910 - 1010
Target Start/End: Original strand, 10061569 - 10061671
Alignment:
Q  910 tatttatctagagagtttt-atcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaatgatgtgtaat 1007  Q
    ||||||||||||||||||| ||||||||||||| || || | ||| || |||||||||||||||||||| |||||||||| ||| |||||||||||||||    
T  10061569 tatttatctagagagtttttatcaagaatttatcaaaaaaaagtctcaaccaattaaatttgttatttgacagaaatcaagggaggtaatgatgtgtaat 10061668  T
Q  1008 taa 1010  Q
    |||    
T  10061669 taa 10061671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 900 - 1010
Target Start/End: Original strand, 35412993 - 35413105
Alignment:
Q  900 agagcattgctatttatctagagagtttt-atcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaat 997  Q
    |||| |||||||||||||||||||||||| ||||| ||||||| ||||| ||||| || |||||||||||||||||||| | |||||||| ||| |||||    
T  35412993 agagaattgctatttatctagagagtttttatcaataatttatcaagaaaaggtctcaaccaattaaatttgttatttgacggaaatcaagggaggtaat 35413092  T
Q  998 gatgtgtaattaa 1010  Q
      |||||||||||    
T  35413093 agtgtgtaattaa 35413105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 901 - 1011
Target Start/End: Complemental strand, 43537288 - 43537173
Alignment:
Q  901 gagcattgctatttatctagagagtttt----atcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagta 995  Q
    |||||||| |||||||||||||||||||    |||||||||| || ||||| ||||| || |||||||||||||||||||| | |||||||| ||| |||    
T  43537288 gagcattgttatttatctagagagttttttttatcaagaattaatcaagaaaaggtctcagccaattaaatttgttatttgccggaaatcaagggaggta 43537189  T
Q  996 atgatgtgtaattaaa 1011  Q
    ||| ||||||||||||    
T  43537188 atggtgtgtaattaaa 43537173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 900 - 1011
Target Start/End: Original strand, 21540041 - 21540154
Alignment:
Q  900 agagcattgctatttatctagagagtttt-atcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaat 997  Q
    ||||||||||||||||| ||||||||||| |||||||| |||| ||||| | ||| || |||||||||||||||||||||| ||||| || |||  ||||    
T  21540041 agagcattgctatttatttagagagtttttatcaagaaattatcaagaaaatgtctcagccaattaaatttgttatttggcggaaattaagggagataat 21540140  T
Q  998 gatgtgtaattaaa 1011  Q
    || |||||||||||    
T  21540141 gaagtgtaattaaa 21540154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 900 - 1010
Target Start/End: Original strand, 29657331 - 29657443
Alignment:
Q  900 agagcattgctatttatctagagag-ttttatcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaat 997  Q
    |||||||| |||||||||||||||| ||||||||| ||||  | ||||| ||||| || |||||||||||||||||||| |  ||||||||||| |||||    
T  29657331 agagcattcctatttatctagagagattttatcaaaaattggtcaagaaaaggtctcaaccaattaaatttgttatttgccgaaaatcaaaggaggtaat 29657430  T
Q  998 gatgtgtaattaa 1010  Q
    ||| |||||||||    
T  29657431 gatatgtaattaa 29657443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 900 - 1011
Target Start/End: Complemental strand, 23906747 - 23906634
Alignment:
Q  900 agagcattgctatttatctagagag-ttttatcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaat 997  Q
    |||||||||||||||||||||| || |||||||||||||| || ||||| | ||  || |||||||||||||||||||| || |||||||  || |||||    
T  23906747 agagcattgctatttatctagaaaggttttatcaagaattgatcaagaaaaagtttcagccaattaaatttgttatttgccacaaatcaagagaggtaat 23906648  T
Q  998 gatgtgtaattaaa 1011  Q
    | ||||||||||||    
T  23906647 ggtgtgtaattaaa 23906634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 957 - 1010
Target Start/End: Original strand, 11470050 - 11470103
Alignment:
Q  957 ccaattaaatttgttatttggcagaaatcaaaggaagtaatgatgtgtaattaa 1010  Q
    |||||||||||||||||||||| |||||||| ||| ||||||||||||||||||    
T  11470050 ccaattaaatttgttatttggcggaaatcaagggaggtaatgatgtgtaattaa 11470103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 910 - 1010
Target Start/End: Complemental strand, 35149795 - 35149693
Alignment:
Q  910 tatttatctagagagtttt-atcaagaatttattaagaataggtcc-acccaattaaatttgttatttggcagaaatcaaaggaagtaatgatgtgtaat 1007  Q
    ||||||||||||||||||| ||||||||||||| ||||| |  ||  | |||||||||||||||||||| || ||||||| |||  ||||||||| ||||    
T  35149795 tatttatctagagagtttttatcaagaatttatcaagaaaatatcttaaccaattaaatttgttatttgacataaatcaagggagataatgatgtataat 35149696  T
Q  1008 taa 1010  Q
    |||    
T  35149695 taa 35149693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 901 - 947
Target Start/End: Complemental strand, 9113574 - 9113526
Alignment:
Q  901 gagcattgctatttatctagagagtttt--atcaagaatttattaagaa 947  Q
    |||||||| |||||||||| ||||||||  |||||||||||||||||||    
T  9113574 gagcattgttatttatctaaagagttttttatcaagaatttattaagaa 9113526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 3e-20; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 905 - 1010
Target Start/End: Original strand, 19482490 - 19482597
Alignment:
Q  905 attgctatttatctagagagttttatc-aagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaatgatgt 1002  Q
    ||||||||||||||||||||||||||  |||||||||| ||||| |  |  || |||||||||||||||||||||| |||||||| |||||||||| |||    
T  19482490 attgctatttatctagagagttttatttaagaatttatcaagaaaatttttcaaccaattaaatttgttatttggcggaaatcaagggaagtaatggtgt 19482589  T
Q  1003 gtaattaa 1010  Q
    ||||||||    
T  19482590 gtaattaa 19482597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 901 - 1010
Target Start/End: Original strand, 41545383 - 41545494
Alignment:
Q  901 gagcattgctatttatctagagagtttt-atcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaatg 998  Q
    ||||||| |||||||||||||||||||  ||||||||||||| ||||| ||| | || ||||||||||||||||||||||||||||| ||| | |||||     
T  41545383 gagcattactatttatctagagagtttccatcaagaatttatcaagaaaaggcctcaaccaattaaatttgttatttggcagaaatcgaagaaggtaatt 41545482  T
Q  999 atgtgtaattaa 1010  Q
     |||||||||||    
T  41545483 gtgtgtaattaa 41545494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 900 - 1010
Target Start/End: Original strand, 37762772 - 37762886
Alignment:
Q  900 agagcattgctatttatctagagagtttt-atcaagaatttattaagaataggtc---cacccaattaaatttgttatttggcagaaatcaaaggaagta 995  Q
    |||||||||||||||||||| |||||||| ||||||||||||| ||||| | | |   || |||||||||||||||||||| |  || ||||||||| ||    
T  37762772 agagcattgctatttatctaaagagttttcatcaagaatttatcaagaaaatgccacacaaccaattaaatttgttatttgacgaaagtcaaaggaaata 37762871  T
Q  996 atgatgtgtaattaa 1010  Q
    |||||||||||||||    
T  37762872 atgatgtgtaattaa 37762886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 904 - 1010
Target Start/End: Complemental strand, 42504328 - 42504223
Alignment:
Q  904 cattgctatttatctagagagttttatcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaatgatgt 1002  Q
    |||||||||||||||||||||||||   | ||||| || ||||| || |  || |||||||||||||||||||| | |||||||| ||| ||||||||||    
T  42504328 cattgctatttatctagagagttttt--atgaattgatcaagaaaagatttcaaccaattaaatttgttatttgccggaaatcaagggaggtaatgatgt 42504231  T
Q  1003 gtaattaa 1010  Q
    ||||||||    
T  42504230 gtaattaa 42504223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 925 - 1010
Target Start/End: Original strand, 25817658 - 25817744
Alignment:
Q  925 ttttatcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaatgatgtgtaattaa 1010  Q
    |||||||||||||| || ||||| ||||| || |||||||||||||||||||| | ||||||||  || |||||| |||||||||||    
T  25817658 ttttatcaagaattgatcaagaaaaggtctcagccaattaaatttgttatttgacggaaatcaagtgaggtaatggtgtgtaattaa 25817744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 925 - 1013
Target Start/End: Original strand, 5288515 - 5288604
Alignment:
Q  925 ttttatcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaatgatgtgtaattaaaaa 1013  Q
    |||||| ||||||| |||||||| | ||| || |||||||||||||||||||| |  ||||||| |||  ||||| ||||||||||||||    
T  5288515 ttttattaagaattgattaagaaaatgtctcagccaattaaatttgttatttgccgtaaatcaagggagataatggtgtgtaattaaaaa 5288604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 958 - 1011
Target Start/End: Complemental strand, 29065359 - 29065306
Alignment:
Q  958 caattaaatttgttatttggcagaaatcaaaggaagtaatgatgtgtaattaaa 1011  Q
    ||||||||||||||||||| | |||||||| ||| |||||| ||||||||||||    
T  29065359 caattaaatttgttatttgacggaaatcaatggaggtaatggtgtgtaattaaa 29065306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 900 - 990
Target Start/End: Original strand, 13218423 - 13218514
Alignment:
Q  900 agagcattgctatttatctagagagtttt-atcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaagg 990  Q
    ||||||||||||||||| | ||||||||| || || ||||||||||||| ||||| |   ||||||||||||||||||| ||||||| |||||    
T  13218423 agagcattgctatttattt-gagagtttttattaaaaatttattaagaaaaggtctcggtcaattaaatttgttatttgtcagaaattaaagg 13218514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 899 - 988
Target Start/End: Original strand, 16528529 - 16528620
Alignment:
Q  899 tagagcattgctatttatctagagag-ttttatcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaa 988  Q
    ||||| |||||||||||||||||||| ||||||  |||||| || || |  ||||| || |||||||||||||||||||| | |||||||||    
T  16528529 tagagtattgctatttatctagagagattttatttagaattgatcaatagaaggtctcagccaattaaatttgttatttgtcggaaatcaaa 16528620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 1e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 906 - 1010
Target Start/End: Complemental strand, 32871888 - 32871782
Alignment:
Q  906 ttgctatttatctagagagtttt-atcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaatgatgtg 1003  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| ||||  || |||||||||||||||||||| | |||||||| ||| |||||  ||||    
T  32871888 ttgctatttatctagagagtttttatcaagaatttatcaagaaaaggtttcaaccaattaaatttgttatttgacggaaatcaagggaggtaatagtgtg 32871789  T
Q  1004 taattaa 1010  Q
    |||||||    
T  32871788 taattaa 32871782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 901 - 1010
Target Start/End: Complemental strand, 6784842 - 6784731
Alignment:
Q  901 gagcattgctatttatctagagagtttt-atcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaatg 998  Q
    |||||||||||||||||||||||||||| ||||| ||||||| || || || || || |||||||||||||||||||| | |||||||| |||  |||||    
T  6784842 gagcattgctatttatctagagagtttttatcaacaatttatcaataaaagatctcagccaattaaatttgttatttgtcggaaatcaagggagataatg 6784743  T
Q  999 atgtgtaattaa 1010  Q
     |||||||||||    
T  6784742 gtgtgtaattaa 6784731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 900 - 1010
Target Start/End: Complemental strand, 2130633 - 2130521
Alignment:
Q  900 agagcattgctatttatctagagagtttta-tcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaat 997  Q
    ||||||||| |||||||||||||||||||| | || ||||||| ||||| |  || || |||||||||||||||||||||| |||||||||||| || ||    
T  2130633 agagcattgttatttatctagagagttttaataaaaaatttatcaagaaaaaatctcaaccaattaaatttgttatttggcggaaatcaaaggaggtgat 2130534  T
Q  998 gatgtgtaattaa 1010  Q
      |||||||||||    
T  2130533 tgtgtgtaattaa 2130521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 958 - 1010
Target Start/End: Original strand, 6519267 - 6519319
Alignment:
Q  958 caattaaatttgttatttggcagaaatcaaaggaagtaatgatgtgtaattaa 1010  Q
    ||||||||||||||||||| |  ||||||||||| ||||||||||||||||||    
T  6519267 caattaaatttgttatttgccgaaaatcaaaggatgtaatgatgtgtaattaa 6519319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 900 - 1010
Target Start/End: Original strand, 28867152 - 28867264
Alignment:
Q  900 agagcattgctatttatctagagag-ttttatcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaat 997  Q
    ||||||||| |||||||||| |||| |||||||||||||| |||||||| | ||  ||  |||||||||||||||||||   |||||||||||| |||||    
T  28867152 agagcattgttatttatctaaagagattttatcaagaattgattaagaaaaagtttcaatcaattaaatttgttatttgttggaaatcaaaggaggtaat 28867251  T
Q  998 gatgtgtaattaa 1010  Q
      | |||||||||    
T  28867252 agtatgtaattaa 28867264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 7e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 901 - 1010
Target Start/End: Complemental strand, 24068256 - 24068146
Alignment:
Q  901 gagcattgctatttatctagagag-ttttatcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaatg 998  Q
    |||||||||||||||||||||||| |||||||||||||| ||  |||| | ||| || |||||||||||||||||||| || ||||||||||| || |||    
T  24068256 gagcattgctatttatctagagagattttatcaagaattgatcgagaaaaagtctcagccaattaaatttgttatttgcca-aaatcaaaggaggtgatg 24068158  T
Q  999 atgtgtaattaa 1010  Q
     |||||||||||    
T  24068157 gtgtgtaattaa 24068146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 900 - 1011
Target Start/End: Complemental strand, 38585229 - 38585116
Alignment:
Q  900 agagcattgctatttatctagagagtttt-atcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaat 997  Q
    |||| |||| ||||||| ||||||||||| ||||||||||||| ||||| | ||  ||   |||||||||||| ||||||| |||||||||||| |||||    
T  38585229 agagtattgatatttatttagagagtttttatcaagaatttatcaagaaaatgtttcaattaattaaatttgtcatttggcggaaatcaaaggaggtaat 38585130  T
Q  998 gatgtgtaattaaa 1011  Q
      ||||||||||||    
T  38585129 tgtgtgtaattaaa 38585116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 901 - 1010
Target Start/End: Original strand, 29414352 - 29414461
Alignment:
Q  901 gagcattgctatttatctagagagttttatcaagaatttattaagaataggtc-cacccaattaaatttgttatttggcagaaatcaaaggaagtaatga 999  Q
    ||||||||||||||||||||||  ||||||||| |||| || ||||| | ||| || |||||||||||||||||||| |  ||||||| | | ||||||     
T  29414352 gagcattgctatttatctagag-tttttatcaaaaattgatcaagaaaatgtctcagccaattaaatttgttatttgccgaaaatcaaggaaggtaatgg 29414450  T
Q  1000 tgtgtaattaa 1010  Q
    ||| |||||||    
T  29414451 tgtttaattaa 29414461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 898 - 936
Target Start/End: Original strand, 26415528 - 26415567
Alignment:
Q  898 ttagagcattgctatttatctagagag-ttttatcaagaa 936  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  26415528 ttagagcattgctatttatctagagagtttttatcaagaa 26415567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 901 - 1010
Target Start/End: Complemental strand, 5686437 - 5686319
Alignment:
Q  901 gagcattgctatttatctagagagttttatcaagaatttattaagaataggtc---------cacccaattaaatttgttatttggcagaaatcaaagga 991  Q
    |||||||||||||||||| ||||  ||||||||||||| || ||||| |||||         ||  ||||||||||||||||||| | |||||||| |||    
T  5686437 gagcattgctatttatcttgagaaatttatcaagaattgatcaagaaaaggtcccaaactctcaatcaattaaatttgttatttgccggaaatcaaggga 5686338  T
Q  992 agtaatgatgtgtaattaa 1010  Q
     ||||| || |||||||||    
T  5686337 ggtaataatatgtaattaa 5686319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 899 - 975
Target Start/End: Complemental strand, 29543754 - 29543676
Alignment:
Q  899 tagagcattgctatttatctagagagtttt-atcaagaatttattaagaataggtc-cacccaattaaatttgttattt 975  Q
    |||||||||| |||||||| |||||||||| ||||| ||||||| ||||| |  || || |||||||||||||||||||    
T  29543754 tagagcattgttatttatcaagagagtttttatcaaaaatttatcaagaaaatatctcaaccaattaaatttgttattt 29543676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 903 - 947
Target Start/End: Original strand, 35393710 - 35393755
Alignment:
Q  903 gcattgctatttatctagagag-ttttatcaagaatttattaagaa 947  Q
    |||||||||||||||||||||| |||||||||||||| || |||||    
T  35393710 gcattgctatttatctagagagtttttatcaagaattgatcaagaa 35393755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 898 - 938
Target Start/End: Complemental strand, 36947370 - 36947329
Alignment:
Q  898 ttagagcattgctatttatctagagag-ttttatcaagaatt 938  Q
    ||||||||||| ||||||||||||||| ||||||||||||||    
T  36947370 ttagagcattgttatttatctagagagattttatcaagaatt 36947329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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