View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4966-Insertion-4 (Length: 381)
Name: NF4966-Insertion-4
Description: NF4966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4966-Insertion-4 |
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| [»] chr1 (5 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 203 - 381
Target Start/End: Complemental strand, 52077572 - 52077394
Alignment:
| Q |
203 |
ctggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacatc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
52077572 |
ctggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacaac |
52077473 |
T |
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| Q |
303 |
cctttcacaaaaccaattcatgttttctctgtcaacaaacagtatataatttctcttatcactcactatcgtcgtttcc |
381 |
Q |
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| T |
52077472 |
cctttcacaaaaccaattcatgttttctctctcaacaaacagtatataatttctcttatcactcactatcgtcgtttcc |
52077394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 204 - 381
Target Start/End: Complemental strand, 3616287 - 3616109
Alignment:
| Q |
204 |
tggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacatcc |
303 |
Q |
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| T |
3616287 |
tggttccttttagaaacaagattagtatttacaattaacccataaaaaatattattattaattctggttgttattaactattgttcatcgatctacaacc |
3616188 |
T |
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| Q |
304 |
ctttcac-aaaaccaattcatgttttctctgtcaacaaacagtatataatttctcttatcactcactatcgtcgtttcc |
381 |
Q |
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| T |
3616187 |
ctttcacaaaaaccaattcatgttttctctctcaacaaacagtacataatttctcttatcactcactgtcgccgtttcc |
3616109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 52077704 - 52077624
Alignment:
| Q |
49 |
tctccaggaatcttcatatcttcttctcccaaattcataaattcatcacacaccaccatcataaattcatccctacaccatcatcactg |
137 |
Q |
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| T |
52077704 |
tctccaggaatcttcatatcttcttctcccaaattcat--------cacacaccaccatcataaattcatccctacaccaccatcactg |
52077624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 3616436 - 3616352
Alignment:
| Q |
45 |
ttcatctccaggaatcttcatatcttcttctcccaaattcataaattcatcacacaccaccatcataaattcatccctacaccatcatcactg |
137 |
Q |
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| T |
3616436 |
ttcatctccaggaatcttcatatcttcttctcccaaat--------tcatcagacaccgccatcataaattcatccatacaccaccatcactg |
3616352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 12666996 - 12666941
Alignment:
| Q |
79 |
aaattcataaattcatcacacaccaccatcataaattcatccctacaccatcatcac |
135 |
Q |
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| T |
12666996 |
aaattcataaat-catcacacaccaccatcataaattcatcactacaccaccatcac |
12666941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 204 - 381
Target Start/End: Original strand, 16756567 - 16756744
Alignment:
| Q |
204 |
tggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacatcc |
303 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| || |
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| T |
16756567 |
tggttccttttagaatcaagatttgtatttacgattaacccataaaaaatattattattaattttggttgttattaactattgttcatcgatctacaacc |
16756666 |
T |
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| Q |
304 |
ctttcacaaaaccaattcatgttttctctgtcaacaaacagtatataatttctcttatcactcactatcgtcgtttcc |
381 |
Q |
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| T |
16756667 |
ctttcacaaaaccaattcatgttttctctctcaacaaacagtatataatttctcttatcactcactatcgttgtttcc |
16756744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 16756443 - 16756516
Alignment:
| Q |
45 |
ttcatctccaggaatcttcatatcttcttctcccaaattcataaattcatcacacaccaccatcataaattcat |
118 |
Q |
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| T |
16756443 |
ttcatctccatgaatcttcatatcttcttctcccaaattcataaattcatcacacaccaccatcataaattcat |
16756516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 360
Target Start/End: Original strand, 7309443 - 7309499
Alignment:
| Q |
302 |
ccctttcacaaaaccaattcatgttttctctgtcaacaaacagtatataatttctctta |
360 |
Q |
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| T |
7309443 |
ccctttcacaaaacaagttcatgttttctc--tcaacaaaaagtatataatttctctta |
7309499 |
T |
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