View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4966-Insertion-7 (Length: 317)

Name: NF4966-Insertion-7
Description: NF4966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4966-Insertion-7
NF4966-Insertion-7
[»] chr4 (1 HSPs)
chr4 (8-317)||(42790972-42791281)


Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 317
Target Start/End: Original strand, 42790972 - 42791281
Alignment:
Q  8 gaagaagaaggtagaaagtgcatttgacaagataagctagcacatgcaccttgttttgctttggcagcgttatgggcagcaagaacatcatgtttgatag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42790972 gaagaagaaggtagaaagtgcatttgacaagataagctagcacatgtaccttgttttgctttggcagcgttatgggcagcaagaagatcatgtttgatag 42791071  T
Q  108 ttgttatatggctctggacaacaagcatcatgtcgttgaaattcggcacagtttcggtacctacatttgttgtgtttcgagcagcagaggcaccatcaac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42791072 ttgttatatggctctggacaacaagcatcatgtcgttgaaattcggcacagtttcggtacctacatttgttgtgtttcgagcagcagaggcaccatcaac 42791171  T
Q  208 ggtgttgttttgacgcggcatagtggcagggatagagtcctgcagccaacggtcagttgcagcattacctatcctttgtgaagcggggttgagatagaca 307  Q
     |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42791172 agtgttgttttgacgcggcatagtggcagggatagggtcctgcagccaacggttagttgcagcattacctatcctttgtgaagcggggttgagatagaca 42791271  T
Q  308 cctcagtttc 317  Q
    ||| ||||||    
T  42791272 ccttagtttc 42791281  T

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