View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4966-Insertion-9 (Length: 226)

Name: NF4966-Insertion-9
Description: NF4966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4966-Insertion-9
NF4966-Insertion-9
[»] chr2 (1 HSPs)
chr2 (8-226)||(8913634-8913852)
[»] chr5 (2 HSPs)
chr5 (8-226)||(8346616-8346835)
chr5 (8-226)||(42822786-42823005)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 8913634 - 8913852
Alignment:
Q  8 ctttgatccaatccaattatgtggtcacacaataacatgaatgtctctttctcaatacttatttatgccggttaatttgccatcttctggttatagttgg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8913634 ctttgatccaatccaattatgtggtcacacaataacatgaatgtctctttctcaatacttatttatgccggttaatttgccatcttctggttatagttgg 8913733  T
Q  108 aatctcaatctgaacctctcccatcagattaattggtgtccttatatatcaagtcattcatgatcttactttggttaagagttcctaaacttttgggaaa 207  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8913734 aatctcaatctgaacctttcccatcagattaattggtgtccttatatatcaagtcattcatgatcttactttggttaagagttcctaaacttttgggaaa 8913833  T
Q  208 taaagtaaagagcatttgg 226  Q
    |||| ||||||||||||||    
T  8913834 taaactaaagagcatttgg 8913852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 8346616 - 8346835
Alignment:
Q  8 ctttgatccaatccaattatgtggtcacac-aataacatgaatgtctctttctcaatacttatttatgccggttaatttgccatcttctggttatagttg 106  Q
    |||||||||||||||||||||||||||||  ||||||||||| |||||| ||  ||||| ||||||||||||||||||||||||||| ||||||||||||    
T  8346616 ctttgatccaatccaattatgtggtcacaataataacatgaaggtctctatcaaaatacgtatttatgccggttaatttgccatcttatggttatagttg 8346715  T
Q  107 gaatctcaatctgaacctctcccatcagattaattggtgtccttatatatcaagtcattcatgatcttactttggttaagagttcctaaacttttgggaa 206  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8346716 gaatctcaatctgaacctttaccatcagattaattggtgtccttatatatcaagtcattcatgatcttactttggttaagagttcctaaacgtttgggaa 8346815  T
Q  207 ataaagtaaagagcatttgg 226  Q
    ||| | ||||||||||||||    
T  8346816 atacactaaagagcatttgg 8346835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 42823005 - 42822786
Alignment:
Q  8 ctttgatccaatccaattatgtggtcacac-aataacatgaatgtctctttctcaatacttatttatgccggttaatttgccatcttctggttatagttg 106  Q
    |||||||||||||||||||||||||||||  ||||||||||| |||||| ||  ||||| ||||||||||||||||||||||||||| ||||||||||||    
T  42823005 ctttgatccaatccaattatgtggtcacaataataacatgaaggtctctatcaaaatacgtatttatgccggttaatttgccatcttatggttatagttg 42822906  T
Q  107 gaatctcaatctgaacctctcccatcagattaattggtgtccttatatatcaagtcattcatgatcttactttggttaagagttcctaaacttttgggaa 206  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42822905 gaatctcaatctgaacctttaccatcagattaattggtgtccttatatatcaagtcattcatgatcttactttggttaagagttcctaaacgtttgggaa 42822806  T
Q  207 ataaagtaaagagcatttgg 226  Q
    ||| | ||||||||||||||    
T  42822805 atacactaaagagcatttgg 42822786  T

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