View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4966_high_3 (Length: 457)
Name: NF4966_high_3
Description: NF4966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4966_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 53004740 - 53004297
Alignment:
| Q |
1 |
tcttccctcttgcatcaccccaatataacttttgagtggaaaatatgtannnnnnnnaacgagggaaaatataaaatatgt-tatttcacatgtgatgtg |
99 |
Q |
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| T |
53004740 |
tcttccctcttgcatcaccccaatataacttttgagtggaaaatatgtattttttttaacgagggaaaatatataatctatatatttcacatgtgatgtg |
53004641 |
T |
|
| Q |
100 |
tccttaaccttaattacttcttttaaaaaatatctataatctatattctgtttaaatttatga-tccccttcataattatgtgtttgaaactgtagannn |
198 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
53004640 |
tccttaaccttaattagttcttttaaaaaatatctataatctatatactgtttaaatttatgaatccccttcataattatgtgtttgaaaatgtagattg |
53004541 |
T |
|
| Q |
199 |
nnnncttgttcgacaataaaatgtaggtacaggtcattttagacaaaagccattttaaattgtggagccatacttggcaaattttagtcattcactgatt |
298 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53004540 |
ttttcttgttcgacaaaaaaatgtaggtacaggtcattttagacaaaagccattttaaattgtggagccatacttggcaaattttagtcattcactgatt |
53004441 |
T |
|
| Q |
299 |
ttgtttacactaggttatgaaatcacctaatcacgtgctatttacaatttcagtaactactgatatgatcgccctcttttcttaagttacattgaattag |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
53004440 |
ttgtttacactaggttatgaaatcacctaatcacgtgctatttacaatttcagtgactacttatatgatcgccctcttttcttaagttacattgaattag |
53004341 |
T |
|
| Q |
399 |
gtttgataatttaggtgtaaataaattcagtagttgttgtgaat |
442 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
53004340 |
gtttgataatttaggtggaaataaattcagtagttgttgtgaat |
53004297 |
T |
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