View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4966_low_1 (Length: 459)
Name: NF4966_low_1
Description: NF4966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4966_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Complemental strand, 53425985 - 53425547
Alignment:
| Q |
18 |
agatacaggttg---attattattttattgttgatataaatgaaatatgatttatatataatgtacatgtacataacatacatacatgtttcataatttt |
114 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53425985 |
agatacaggttgctaattattattttattgttgatataaatgaaatatgatttatatataatgtacatgtacataacatacatacatgtttcataatttt |
53425886 |
T |
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| Q |
115 |
aacaataagttaattaaatgaacaatgagttattcaggtatatggcctgaagcagcaagtttttcagacaagggaatgggtcctattccacccggttgga |
214 |
Q |
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| T |
53425885 |
aacaataagttaattaaataaacaatgagttattcaggtatatggccagaagcagcaagtttttcagacaagggaatgggtcctattccacccagttgga |
53425786 |
T |
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| Q |
215 |
aaggcacatgcatggcctcaaaagatttcaattcatccaactgtaacaggtgtgttgtgaataagatgtttttcatcgatctgaattgattatgattttg |
314 |
Q |
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| T |
53425785 |
aaggcatctgcatgacatcaaaagacttcaactcatccaactgtaacaggtgtgttgtgaataagatgtttttcatcgatctgaattgattatgattttg |
53425686 |
T |
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| Q |
315 |
taacaaaatattacataaatttaaccaaaccctgctaatcaatatgtgattgatttgaatttctctctcacataaatcgagtcaagccaacctgttatat |
414 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53425685 |
taacaaaatattaaataaatttaaccaaaccctgctaatcaatatgtgattgatttgaatttctctctcacataaatcgagtcaagccaacctgttatat |
53425586 |
T |
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| Q |
415 |
cctatacattatttctatgtttacgctgatgatgtccat |
453 |
Q |
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| T |
53425585 |
cccatacattatttctatgtttacgcttatgaggtccat |
53425547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 148 - 265
Target Start/End: Complemental strand, 53434142 - 53434025
Alignment:
| Q |
148 |
tcaggtatatggcctgaagcagcaagtttttcagacaagggaatgggtcctattccacccggttggaaaggcacatgcatggcctcaaaagatttcaatt |
247 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
53434142 |
tcaggtatatggccagaagcagcaagtttttcagacaagggaatgggtcctattccacccggttggaaaggcacatgcatggcctcaaaagatttcaact |
53434043 |
T |
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| Q |
248 |
catccaactgtaacaggt |
265 |
Q |
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| T |
53434042 |
catccaactgtaacaggt |
53434025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 144 - 265
Target Start/End: Original strand, 48371257 - 48371378
Alignment:
| Q |
144 |
ttattcaggtatatggcctgaagcagcaagtttttcagacaagggaatgggtcctattccacccggttggaaaggcacatgcatggcctcaaaagatttc |
243 |
Q |
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| T |
48371257 |
ttattcaggtatatggccagaagcaacaagtttttcggacaatggaatggatcctattccatccggttggaaaggcatttgcatgacatcaaatgacttc |
48371356 |
T |
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| Q |
244 |
aattcatccaactgtaacaggt |
265 |
Q |
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|| ||||| || ||||| |||| |
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| T |
48371357 |
aactcatctaattgtaataggt |
48371378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 53321559 - 53321486
Alignment:
| Q |
145 |
tattcaggtatatggcctgaagcagcaagtttttcagacaagggaatgggtcctattccacccggttggaaagg |
218 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
53321559 |
tattcaggtatatggccaaaagcacaaagtttttcagacaagggaatggatcctattccacctggttggaaagg |
53321486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 265
Target Start/End: Complemental strand, 26098802 - 26098735
Alignment:
| Q |
198 |
tattccacccggttggaaaggcacatgcatggcctcaaaagatttcaattcatccaactgtaacaggt |
265 |
Q |
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||||||| |||||||||| || || |||||| | |||||||||||||| ||||||||||||||||||| |
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| T |
26098802 |
tattccaaccggttggaatggtacctgcatgacatcaaaagatttcaactcatccaactgtaacaggt |
26098735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 26099001 - 26098949
Alignment:
| Q |
148 |
tcaggtatatggcctgaagcagcaagtttttcagacaagggaatgggtcctat |
200 |
Q |
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||||| |||||||| |||||| |||||||||||||||||| |||||||||||| |
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| T |
26099001 |
tcagggatatggccagaagcaccaagtttttcagacaaggaaatgggtcctat |
26098949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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