View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4966_low_2 (Length: 458)
Name: NF4966_low_2
Description: NF4966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4966_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 1451365 - 1451792
Alignment:
| Q |
18 |
caagcaatgtaagactcgtattcccatcgaccaataacttctttcggcaaa-tgtgttgcaaatgttgtggcttcagctccacgcaacagcctggatttg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1451365 |
caagcaatgtaagactcgtattcccatcgaccaataacttctttcggcaaaatgtgttgcaaatgttgtggctttagctccacgcaacagcctggatttg |
1451464 |
T |
|
| Q |
117 |
gacaataaacattctttatgttgtggattacttggtcagccacatgcttagatatacaattgtcacaaaaggggtgattgcatattgcacttcctctaac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1451465 |
gacaataaacattctttatgttgtggattacttggtcagccacatgcttagatatacaattgtcacaaaaggggtgattgcatattgcacttcctcaaa- |
1451563 |
T |
|
| Q |
217 |
aatgtcagagtcttgtatgaaatcaaagcataaaccacaaaaggattttggaggtagtgaagaacattcacagctggtctcaatagtttctttcttcaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1451564 |
aatgtcagagtcttgtatgaaatcaaagcataaaccacaaaaggattttggaggtagtgaagaacattcacagctggtctcaatagtttctttcttcaac |
1451663 |
T |
|
| Q |
317 |
tctttctcattacttgttactgaacatttgagaatccctttcaaattttgttgttggaattcattacacttcactttcactgagttttgatttggttgat |
416 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1451664 |
tctttctcattacttgttactgaacatttgagaatccttttcaaattttgttgttggaattcattacacttcactttcactgagttttgatttggttgat |
1451763 |
T |
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| Q |
417 |
caatggtgaatgtgactttcttcctcttc |
445 |
Q |
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| T |
1451764 |
caatggtgaatgtgactttcttcctcttc |
1451792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 1455084 - 1455333
Alignment:
| Q |
18 |
caagcaatgtaagactcgtattcccatcgaccaataacttctttcggcaaa-tgtgttgcaaatgttgtggcttcagctccacgcaacagcctggatttg |
116 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||| |||||| | |||||||||| ||||||||||| ||||||| |||| | ||||||| |
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| T |
1455084 |
caagccatgtaagactcgtattcccatcgaccaaccacttctttaggcaaaatatgttgcaaatactgtggcttcagttccacgctacagacaggatttg |
1455183 |
T |
|
| Q |
117 |
gacaataaacattctttatgttgtggattacttggtcagccacatgcttagatatacaattgtcacaaaaggggtgattgcatattgcacttcctctaac |
216 |
Q |
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||||| ||| |||||||| || ||| ||| ||| ||||||||||||||||||||||||||| ||||||| | ||||||||||| | ||||||||| || |
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| T |
1455184 |
gacaacaaattttctttatattttggcttagttgttcagccacatgcttagatatacaattggcacaaaactgatgattgcatatggtacttcctctgac |
1455283 |
T |
|
| Q |
217 |
aatgtcagagtcttgtatgaaatcaaagcataaaccacaaaaggattttg |
266 |
Q |
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||| | | ||| ||| || |||| |||||||| |||||| |||||||| |
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| T |
1455284 |
aatattggcatctggtacgatatcatagcataaatcacaaatggattttg |
1455333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 266
Target Start/End: Complemental strand, 736433 - 736241
Alignment:
| Q |
74 |
tgcaaatgttgtggcttcagctccacgcaacagcctggatttggacaataaacattctttatgttgtggattacttggtcagccacatgcttagatatac |
173 |
Q |
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||||||||||| ||||||| |||| || |||| | |||||||||||||| || | | ||| | ||| ||| ||| |||||||||| |||||||||| |
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| T |
736433 |
tgcaaatgttgcggcttcaactcctcgaaacatcttggatttggacaattaaactccattacactctggcttagttgtgcagccacatgattagatatac |
736334 |
T |
|
| Q |
174 |
aattgtcacaaaaggggtgattgcatattgcacttcctctaacaatgtcagagtcttgtatgaaatcaaagcataaaccacaaaaggattttg |
266 |
Q |
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|||| ||||||| || || || ||| | |||| ||||||||||| ||| ||| ||| |||||||| |||| ||||||||||||||||| |
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| T |
736333 |
aattagcacaaaatggatggttacatgtgccactacctctaacaatatcattctctggtacaaaatcaaaacatacaccacaaaaggattttg |
736241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 1455393 - 1455438
Alignment:
| Q |
362 |
ttttgttgttggaattcattacacttcactttcactgagttttgat |
407 |
Q |
| |
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||||||||||| |||||||| || |||||||||||| ||||||||| |
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| T |
1455393 |
ttttgttgttgaaattcattgcaattcactttcactaagttttgat |
1455438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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