View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4966_low_4 (Length: 454)
Name: NF4966_low_4
Description: NF4966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4966_low_4 |
 | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
| [»] scaffold0554 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 12611129 - 12610693
Alignment:
| Q |
1 |
tggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatttgcaacaagggtcacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
12611129 |
tggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgattcgcaacaagggtcgcc |
12611030 |
T |
|
| Q |
101 |
cgtcaacatcactaaggttgtagtttcatcaacatttggtatcattacaaaggccgcgtttggcagcaaaggcaaaggcagagaagagtttgggtctatt |
200 |
Q |
| |
|
|||||| || ||| || |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12611029 |
cgtcaatataactcagcttgtagtttcatcaacattttctatcattacaaaggctgcgtttggcagcaaaggcaaaggcagagaagagtttggatctatt |
12610930 |
T |
|
| Q |
201 |
agagatggagaatcaattgcaggaggttttgacatagctgaattatttccttcagctaaatggcttcaacgtgtttccggtttgaggcctaaactggaga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12610929 |
ggagatggagaatcaattgcaggaggttttgacatagctgaattatttccttcagcgaaatggcttcaacgtgtttccggtttgaggcctaaactggaga |
12610830 |
T |
|
| Q |
301 |
ggttgcataggcaaattgatcaaatactagaaaacattgtcactgaacataaagaagcaaagtcaaaagcaaatgaaagtcaaggtggagaagaagaaga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12610829 |
ggttgcataggcaaattgatcaaatactagaaaacattgtcactgaacataaagaagcaaagtcaaaagcaaatgaaagtcaaggtggagaagaagaaga |
12610730 |
T |
|
| Q |
401 |
tctcgtagacattcttctaaaattccaaggtggtaat |
437 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
12610729 |
tctggtagacgttcttctaaaattccaaggtggtaat |
12610693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 15884919 - 15885346
Alignment:
| Q |
1 |
tggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatttgcaacaagggtcacc |
100 |
Q |
| |
|
|||||||||| | ||||| | ||| ||||| || || |||||||||||||||| | ||| ||||||| | |||| ||||| || | | ||||||||| | |
|
|
| T |
15884919 |
tggagcttttatcgcaaaaacatgtgagttcattccatccaataagagaagaagtgtttaccaatctcatcaaaaggattggttcgaagcaagggtcatc |
15885018 |
T |
|
| Q |
101 |
cgtcaacatcactaaggttgtagtttcatcaacatttggtatcattacaaaggccgcgtttggcagcaaaggcaaaggcagagaagagtttgggtctatt |
200 |
Q |
| |
|
| ||||| ||||| | ||||||||||||| ||||||| |||| || ||| ||| || ||||| | |||| |||||| | ||||||||| | |||| | |
|
|
| T |
15885019 |
catcaacctcactgaacttgtagtttcatcgacatttgctatcctttcaagggctgcatttggaaacaaatgcaaagaccaagaagagttcgcgtctttg |
15885118 |
T |
|
| Q |
201 |
agagatggagaatcaattgcaggaggttttgacatagctgaattatttccttcagctaaatggcttcaacgtgtttccggtttgaggcctaaactggaga |
300 |
Q |
| |
|
| | |||||||||||||| |||||||||||||||| |||| | ||||||||| |||||||| |||||| |||||||||||||||||||||||| |||| |
|
|
| T |
15885119 |
gggaagggagaatcaattgctggaggttttgacataggtgaactgtttccttcatctaaatggattcaacttgtttccggtttgaggcctaaacttgaga |
15885218 |
T |
|
| Q |
301 |
ggttgcataggcaaattgatcaaatactagaaaacattgtcactgaacataaagaagcaaagtcaaaagcaaatgaaagtcaaggtggagaagaagaaga |
400 |
Q |
| |
|
|||||||||| | ||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||||| ||| | |||| | || ||||||||| |
|
|
| T |
15885219 |
ggttgcatagacgtattgatcgaatactagaaaacatcatcattgaacataaagaagcaaattcaaaagcaaaagaatgccaagaagaagcagaagaaga |
15885318 |
T |
|
| Q |
401 |
tctcgtagacattcttctaaaattccaa |
428 |
Q |
| |
|
| | || ||| |||||||||||| |||| |
|
|
| T |
15885319 |
tttggttgacgttcttctaaaataccaa |
15885346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 205 - 437
Target Start/End: Complemental strand, 12637925 - 12637699
Alignment:
| Q |
205 |
atggagaatcaattgcaggaggttttgacatagctgaattatttccttcagctaaatggcttcaacgtgtttccggtttgaggcctaaactggagaggtt |
304 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||| ||| ||||| | ||| || |
|
|
| T |
12637925 |
atggagaatcagttggaggaggttttgacataggtgaattgtttccttcagctaaatggcttcaactagtttctggtttcaggtctaaaattgaggtatt |
12637826 |
T |
|
| Q |
305 |
gcataggcaaattgatcaaatactagaaaacattgtcactgaacataaagaagcaaagtcaaaagcaaatgaaagtcaaggtggagaagaagaagatctc |
404 |
Q |
| |
|
|||||| |||||||||| ||| ||| |||||| ||| ||||||||||||||| |||||||||||||| | |||| | || ||| |||||||| |
|
|
| T |
12637825 |
gcatagacaaattgatcttatattagtaaacatcatcaatgaacataaagaagctaagtcaaaagcaaaag------aaggcgaagtagaggaagatctg |
12637732 |
T |
|
| Q |
405 |
gtagacattcttctaaaattccaaggtggtaat |
437 |
Q |
| |
|
||||| |||||| |||||| |||||||||||| |
|
|
| T |
12637731 |
gtagatgttcttcaaaaatttcaaggtggtaat |
12637699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 12638115 - 12638017
Alignment:
| Q |
15 |
caaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatttgcaacaagggtcacccgtcaacatcact |
113 |
Q |
| |
|
||||| ||||||||||| || | || ||||||||||||||| | | ||||||| | |||| ||||||| |||||||| |||||| ||||||||||| |
|
|
| T |
12638115 |
caaaaacgtgttagttcattccggcctataagagaagaagagttcaccaatctcatcaaaagtattgattcacaacaaggatcacccatcaacatcact |
12638017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 39 - 434
Target Start/End: Complemental strand, 63224 - 62832
Alignment:
| Q |
39 |
ccaataagagaagaagagcttaacaatctcgtaaaaaagattgatttgcaacaagggtcacccgtcaacatcactaaggttgtagtttcatcaacatttg |
138 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||| |||||||||||||||||| | || |||||||||||| | ||||| || || ||| || |
|
|
| T |
63224 |
ccaataagagaagaagagctctccaatctcatcaaaaggattgatttgcaacaaggattgcctgtcaacatcactgaacttgtacttacaacaatgattt |
63125 |
T |
|
| Q |
139 |
gtatcattacaaaggccgcgtttggcagcaaaggcaaaggcagagaagagtttgggtctattagagatggagaatcaattgcaggaggttttgacatagc |
238 |
Q |
| |
|
||||||| ||| ||| ||||||||| |||| |||||| | |||| |||||| ||| | || || || |||||||| |||||||||||| ||| |
|
|
| T |
63124 |
ctatcatttcaagggctgcgtttggcgacaaatgcaaagcccaagaacagtttgcgtcattgggaaatataggatcaattggaggaggttttgaaataat |
63025 |
T |
|
| Q |
239 |
tgaattatttccttcagctaaatggcttcaacgtgtttccggtttgaggcctaaactggagaggttgcataggcaaattgatcaaatactagaaaacatt |
338 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| | | | | ||||||||||| ||||||||||||| ||| ||||||| ||||| |||||||| |
|
|
| T |
63024 |
tgaattatttccttcagccaaatggcttcaacttatatttaatcaaaggcctaaacttaagaggttgcatagacaacttgatcagatacttgaaaacatc |
62925 |
T |
|
| Q |
339 |
gtcactgaacataaagaagcaaagtcaaaagcaaatgaaagtcaaggtggagaagaagaagatctcgtagacattcttctaaaattccaaggtggt |
434 |
Q |
| |
|
|||| | |||||||||||||||||| ||||| ||| ||| | ||| | |||| ||||||||| |||||| |||||||||| || || |||||| |
|
|
| T |
62924 |
gtcattcaacataaagaagcaaagttaaaagaaaaagaaggacaaact---gaagcagaagatctggtagacgttcttctaaagtttcagggtggt |
62832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 415
Target Start/End: Complemental strand, 23037030 - 23036858
Alignment:
| Q |
246 |
tttccttcagctaaatggcttcaacgtgtttccggtttgaggcctaaactggagaggttgcataggcaaattgatcaaatactagaaaacattgtcactg |
345 |
Q |
| |
|
||||| |||||||||||||| || ||| || | |||||||||||||| ||||||||| | ||| | |||| |||||| ||| |||||||||| ||| || |
|
|
| T |
23037030 |
tttccctcagctaaatggctacagcgtattactggtttgaggcctaagctggagaggattcatcgacaaactgatcagatattagaaaacatcatcaatg |
23036931 |
T |
|
| Q |
346 |
aacataaagaagcaaagt---caaaagcaaatgaaagtcaaggtggagaagaagaagatctcgtagacattct |
415 |
Q |
| |
|
| |||||||| | ||||| ||||||| || || ||||||| ||| ||||||||||||||||||| |||| |
|
|
| T |
23036930 |
agcataaagaggaaaagtacacaaaagccaaagatgatcaaggtagagtagaagaagatctcgtagacgttct |
23036858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 415
Target Start/End: Complemental strand, 23039907 - 23039735
Alignment:
| Q |
246 |
tttccttcagctaaatggcttcaacgtgtttccggtttgaggcctaaactggagaggttgcataggcaaattgatcaaatactagaaaacattgtcactg |
345 |
Q |
| |
|
||||| |||||||||||| | || | |||| | ||| |||||||||| || |||||||| ||| | |||| |||||| ||| |||||||||| ||| || |
|
|
| T |
23039907 |
tttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtttcatcgacaaactgatcagatattagaaaacatcatcaatg |
23039808 |
T |
|
| Q |
346 |
aacataaagaagcaaagt---caaaagcaaatgaaagtcaaggtggagaagaagaagatctcgtagacattct |
415 |
Q |
| |
|
| |||||||| | ||||| ||||||| || || ||||||| || ||||||||||||||||||| |||| |
|
|
| T |
23039807 |
agcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtagaagaagatctcgtagacgttct |
23039735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 360
Target Start/End: Original strand, 5626 - 5770
Alignment:
| Q |
216 |
attgcaggaggttttgacatagctgaattatttccttcagctaaatggcttcaacgtgtttccggtttgaggcctaaactggagaggttgcataggcaaa |
315 |
Q |
| |
|
|||||||||||||||||| | | || || ||||| || ||||||||||| |||| ||| | |||||||||||||| || |||| | | ||| | |||| |
|
|
| T |
5626 |
attgcaggaggttttgacttgggagatttgtttccatctgctaaatggctacaacaagttactggtttgaggcctaagcttgagatgcttcatcgacaaa |
5725 |
T |
|
| Q |
316 |
ttgatcaaatactagaaaacattgtcactgaacataaagaagcaa |
360 |
Q |
| |
|
|||||||||||| |||||||| ||| ||| ||||||||||||| |
|
|
| T |
5726 |
ctgatcaaatacttgaaaacatcatcaatgagcataaagaagcaa |
5770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University