View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4966_low_6 (Length: 376)
Name: NF4966_low_6
Description: NF4966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4966_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 4 - 331
Target Start/End: Complemental strand, 6339631 - 6339310
Alignment:
| Q |
4 |
atctacagcagaaacaacaacaacagtaaacaatgtatgatgaatttgggaccaaagccccgacaaacgccatacttggatagcaaaaggacaagcaggg |
103 |
Q |
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| T |
6339631 |
atctacagcagaaacaacagcaacagtaaaaaatgtatgatgaatttgggaccaaagccccgacaaacgccatactaggatagcaaaaggacaagcaggg |
6339532 |
T |
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| Q |
104 |
aataaatgtgcaagatcatcgtgtgtggaaacacaactaacgcaatgtgttggacacatcacacctttgtcatgaagtcaaaccgtcgtagtcgtagata |
203 |
Q |
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| T |
6339531 |
aataaatgtgccagatcatcgtgtgtggaaacacaactaacgcaatgtgttagacacatcacacctttgtcatgatgtcgaa------tcctcgtagata |
6339438 |
T |
|
| Q |
204 |
aacaacccggcatatcctccaaactaagttccaaagtatttaagcgtccaaataactgatcaatttcttagaattgattcaaacaaaccgaataaacggt |
303 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||| || |
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| T |
6339437 |
aacaacccggcacatcctccaaactaagttccaaagtatttaagcttccaaataactgaccaatatcttagaattgattcaaacaaaccgaataaaccgt |
6339338 |
T |
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| Q |
304 |
agataacaatatataatatccaataatt |
331 |
Q |
| |
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|||||||||||||||||||||| ||||| |
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| T |
6339337 |
agataacaatatataatatccattaatt |
6339310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 117 - 331
Target Start/End: Complemental strand, 6330811 - 6330602
Alignment:
| Q |
117 |
gatcatcgtgtgtggaaacacaactaacgcaatgtgttggacacatcacacctttgtcatgaagtcaaaccgtcgtagtcgtagataaacaacccggcat |
216 |
Q |
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| T |
6330811 |
gatcatcgtgtgtagaaacacaactaacgcaatgtgttggacacatcacacctttgtcatgaagtcgaatcctcctagac------aaacaacccgacac |
6330718 |
T |
|
| Q |
217 |
atcctccaaactaagttccaaagtatttaagcgtccaaataactgatcaatttcttagaattgattcaaacaaa-ccgaataaacggtagataacaatat |
315 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||| |||||||||| |||||||||| |||||||| | ||| |
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| T |
6330717 |
atcctccaaactaagttccaaagtatttaagcttccaaatagctgaccaatttcttagaattgtttcaaacaaacccgaataaaccgtagataaaagtat |
6330618 |
T |
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| Q |
316 |
ataatatccaataatt |
331 |
Q |
| |
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|||||||||| ||||| |
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| T |
6330617 |
ataatatccattaatt |
6330602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 53 - 182
Target Start/End: Original strand, 30677835 - 30677964
Alignment:
| Q |
53 |
gaccaaagccccgacaaacgccatacttggatagcaaaaggacaagcagggaataaatgtgcaagatcatcgtgtgtggaaacacaactaacgcaatgtg |
152 |
Q |
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|||||||| |||||||| |||||||||||||||||||| ||||||| | ||||||||| || ||||| || || ||||||||||| ||||||||||| |
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| T |
30677835 |
gaccaaagtcccgacaagcgccatacttggatagcaaacggacaagtaaagaataaatgcgccagatcctcatgagtggaaacacagctaacgcaatgca |
30677934 |
T |
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| Q |
153 |
ttggacacatcacacctttgtcatgaagtc |
182 |
Q |
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|| ||| |||||||||||||||||||| |
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| T |
30677935 |
aagggcactgcacacctttgtcatgaagtc |
30677964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 182
Target Start/End: Original strand, 13166879 - 13167020
Alignment:
| Q |
41 |
tgatgaatttgggaccaaagccccgacaaacgccatacttggatagcaaaaggacaagcagggaataaatgtgcaagatcatcgtgtgtggaaacacaac |
140 |
Q |
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||||||||||| ||| ||||||| ||||| |||||||||||||||| || || | ||| ||||||||||| ||||| || || ||||||||||||| |
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| T |
13166879 |
tgatgaatttgagactaaagcccagacaaccgccatacttggatagaaattgggtacgcaaagaataaatgtgtcagatcctcatgagtggaaacacaac |
13166978 |
T |
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| Q |
141 |
taacgcaatgtgttggacacatcacacctttgtcatgaagtc |
182 |
Q |
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| T |
13166979 |
taacgcaatttgtagggcactgtacacctttgttatgaagtc |
13167020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 41 - 182
Target Start/End: Original strand, 13179024 - 13179165
Alignment:
| Q |
41 |
tgatgaatttgggaccaaagccccgacaaacgccatacttggatagcaaaaggacaagcagggaataaatgtgcaagatcatcgtgtgtggaaacacaac |
140 |
Q |
| |
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||||||||||| ||||||| ||| ||||| || ||||||||||||| || || | ||| ||||||||||| ||||| || || ||||||||||||| |
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| T |
13179024 |
tgatgaatttgagaccaaatcccagacaaccgtcatacttggatagaaattgggtacgcaaagaataaatgtgtcagatcctcatgagtggaaacacaac |
13179123 |
T |
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| Q |
141 |
taacgcaatgtgttggacacatcacacctttgtcatgaagtc |
182 |
Q |
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||||||||| || || ||| ||||||||||||||||||| |
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| T |
13179124 |
taacgcaattcgtagggcactatacacctttgtcatgaagtc |
13179165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 28416899 - 28416838
Alignment:
| Q |
53 |
gaccaaagccccgacaaacgccatacttggatagcaaaaggacaagcagggaataaatgtgc |
114 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||| ||| |||||| ||||| |
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| T |
28416899 |
gaccaaagccccgacaaacgccatacttgtatagcaaacggacacgcaaagaataagtgtgc |
28416838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 33212942 - 33212905
Alignment:
| Q |
53 |
gaccaaagccccgacaaacgccatacttggatagcaaa |
90 |
Q |
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||||| ||||||||||||||||||||||| |||||||| |
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| T |
33212942 |
gaccacagccccgacaaacgccatacttgtatagcaaa |
33212905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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