View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4966_low_8 (Length: 318)
Name: NF4966_low_8
Description: NF4966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4966_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 49757932 - 49758110
Alignment:
| Q |
11 |
cacagaggatgatccacataagagaaagccagacatctccaaagcaaaagagcttcttggctggcaaccatctgtgtccctccgtgagggacttcctcta |
110 |
Q |
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| T |
49757932 |
cacagaggatgatccacataagagaaagccagacatctccaaagcaaaagagcttcttggctggcaaccatctgtgtccctccgtgagggacttcctcta |
49758031 |
T |
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| Q |
111 |
atggtcgctgatttcaagcaaagattatttggtgatggggacaaaggtgcagctgcagcataggtcagtacagctgtgg |
189 |
Q |
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| T |
49758032 |
atggtcgctgatttcaagcaaagattatttggtgatggggacaaaggtgcagctgcagcataggtcagtacagctgtgg |
49758110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 301
Target Start/End: Original strand, 49758174 - 49758222
Alignment:
| Q |
253 |
cttgacttgttttgaatcaaattagatatatatatcagatgagatttat |
301 |
Q |
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| T |
49758174 |
cttgacttgttttggatcaaattagatatatatatcagatgagatttat |
49758222 |
T |
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