View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4967_high_2 (Length: 307)

Name: NF4967_high_2
Description: NF4967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4967_high_2
NF4967_high_2
[»] chr5 (1 HSPs)
chr5 (119-297)||(35848489-35848660)
[»] chr1 (3 HSPs)
chr1 (18-154)||(29440181-29440317)
chr1 (152-297)||(29440574-29440713)
chr1 (182-231)||(23629490-23629539)
[»] chr2 (2 HSPs)
chr2 (123-297)||(3320175-3320343)
chr2 (220-297)||(23268248-23268320)
[»] chr3 (1 HSPs)
chr3 (117-277)||(52812522-52812676)
[»] chr8 (1 HSPs)
chr8 (121-297)||(3466079-3466249)
[»] chr6 (1 HSPs)
chr6 (121-297)||(15152113-15152283)
[»] chr4 (1 HSPs)
chr4 (121-297)||(4650539-4650709)


Alignment Details
Target: chr5 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 119 - 297
Target Start/End: Complemental strand, 35848660 - 35848489
Alignment:
Q  119 taagtctatgtttggtttgacgtttgaaataatcaaacgtgagtttaagggggttagactcaattttacaaccaaacctacatgtttggttacctatttt 218  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||| ||||||    
T  35848660 taagtctatgtttggtttgacgtttgaaatcatcaaacgtgagtttaagggg-ttagactcaattttacaaccaaac-tacatgtttggctacatatttt 35848563  T
Q  219 ttgatgtgattttttactccaaacttgcgtttcattatattgaagcaggtaatagtagcttttgcaaatcgattctgtg 297  Q
    |||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||    
T  35848562 ttgatgtgattttttactccaaacttgcgtttc-----attgaagcaggtaatagtagcttttgcaaatcgattctgtg 35848489  T

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Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 29440181 - 29440317
Alignment:
Q  18 aaaataagagtagtacctatagaaaagtgtcaaaaacttaagccatgcagaaaaagtgtaaaagaggaacttgcagaaaaatggtggcagagatatcact 117  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29440181 aaaataagagcagtacctatagaaaagtgtcaaaaacttaagccatgcagaaaaagtgtaaaagaggaacttgcagaaaaatggtggcagagatatcaat 29440280  T
Q  118 ttaagtctatgtttggtttgacgtttgaaataatcaa 154  Q
    ||||||||||||||||||||||||||||||| |||||    
T  29440281 ttaagtctatgtttggtttgacgtttgaaatcatcaa 29440317  T

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Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 152 - 297
Target Start/End: Original strand, 29440574 - 29440713
Alignment:
Q  152 caaacgtgagtttaagggggttagactcaattttacaaccaaacctacatgtttggttacctattttttgatgtgattttttactccaaacttgcgtttc 251  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  29440574 caaacgtgagtttaaggggct-agactcaattttacaaccaaacctacatgtctggctacctattttttgatgtgattttttactccaaacttgcgtttc 29440672  T
Q  252 attatattgaagcaggtaatagtagcttttgcaaatcgattctgtg 297  Q
         |||||||||||||||||||||||||||||||||||| ||||    
T  29440673 -----attgaagcaggtaatagtagcttttgcaaatcgattatgtg 29440713  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 23629539 - 23629490
Alignment:
Q  182 ttttacaaccaaacctacatgtttggttacctattttttgatgtgatttt 231  Q
    ||||||||| ||||  ||||||||||||| ||||||||||||| ||||||    
T  23629539 ttttacaacaaaactcacatgtttggttaactattttttgatgcgatttt 23629490  T

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Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 123 - 297
Target Start/End: Complemental strand, 3320343 - 3320175
Alignment:
Q  123 tctatgtttggtttgacgtttgaaataatcaaacgtgagtttaagggggttagactcaattttacaaccaaacctacatgtttggttacctattttttga 222  Q
    ||||||||||||||| | |||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  3320343 tctatgtttggtttggcatttgaaatcatcaaacgtgagtttaaggggct-agactcaattttacaaccaaacctgcatgtttggctacctattttttga 3320245  T
Q  223 tgtgattttttactccaaacttgcgtttcattatattgaagcaggtaatagtagcttttgcaaatcgattctgtg 297  Q
    |||||||||||||||||||||||||||||     ||||||||||||||||||||||||||| |||||||| ||||    
T  3320244 tgtgattttttactccaaacttgcgtttc-----attgaagcaggtaatagtagcttttgcgaatcgattatgtg 3320175  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 220 - 297
Target Start/End: Complemental strand, 23268320 - 23268248
Alignment:
Q  220 tgatgtgattttttactccaaacttgcgtttcattatattgaagcaggtaatagtagcttttgcaaatcgattctgtg 297  Q
    ||||||||||||||||| |||||||||||||||||     ||||||||||||||||||||||||||||||||||||||    
T  23268320 tgatgtgattttttacttcaaacttgcgtttcatt-----gaagcaggtaatagtagcttttgcaaatcgattctgtg 23268248  T

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Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 52812522 - 52812676
Alignment:
Q  117 tttaagtctatgtttggtttgacgtttgaaataatcaaacgtgagtttaagggggttagactcaattttacaaccaaacctacatgtttggttacctatt 216  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| | | |||||||||||||||||||||||||||||||| ||||||||    
T  52812522 tttaactctatgtttggtttgacgtttgaaatcatcaaacgtgagtttaaggggctaa-actcaattttacaaccaaacctacatgtttggctacctatt 52812620  T
Q  217 ttttgatgtgattttttactccaaacttgcgtttcattatattgaagcaggtaatagtagc 277  Q
    |||||||||||||||||||||||||||||||||||     |||||||||||||||||||||    
T  52812621 ttttgatgtgattttttactccaaacttgcgtttc-----attgaagcaggtaatagtagc 52812676  T

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Target: chr8 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 121 - 297
Target Start/End: Complemental strand, 3466249 - 3466079
Alignment:
Q  121 agtctatgtttggtttgacgtttgaaataatcaaacgtgagtttaagggggttagactcaattttacaaccaaacctacatgtttggttacctatttttt 220  Q
    ||||||||||  ||||| |||||||||| ||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||| ||||||||||||    
T  3466249 agtctatgttcagtttggcgtttgaaatcatcaaacgtgagtttgaggggct-agactcaattttacaaccaaacctacatgtttggctacctatttttt 3466151  T
Q  221 gatgtgattttttactccaaacttgcgtttcattatattgaagcaggtaatagtagcttttgcaaatcgattctgtg 297  Q
    |||||||||||||||||||||||||||||||     |||||||||||||| |||||| |||||||||||||| ||||    
T  3466150 gatgtgattttttactccaaacttgcgtttc-----attgaagcaggtaacagtagcatttgcaaatcgattttgtg 3466079  T

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Target: chr6 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 121 - 297
Target Start/End: Complemental strand, 15152283 - 15152113
Alignment:
Q  121 agtctatgtttggtttgacgtttgaaataatcaaacgtgagtttaagggggttagactcaattttacaaccaaacctacatgtttggttacctatttttt 220  Q
    ||||||||||||||||| |||||||||| ||||||| |||||||||| || | ||||| |||||||||||||||||||||||||||  ||||||||||||    
T  15152283 agtctatgtttggtttggcgtttgaaatcatcaaacatgagtttaagaggct-agactaaattttacaaccaaacctacatgtttgactacctatttttt 15152185  T
Q  221 gatgtgattttttactccaaacttgcgtttcattatattgaagcaggtaatagtagcttttgcaaatcgattctgtg 297  Q
    ||||||||||||||||||||||||| |||||     |||||||||||||||||||||||||||||||||||| ||||    
T  15152184 gatgtgattttttactccaaacttgagtttc-----attgaagcaggtaatagtagcttttgcaaatcgattatgtg 15152113  T

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Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 121 - 297
Target Start/End: Complemental strand, 4650709 - 4650539
Alignment:
Q  121 agtctatgtttggtttgacgtttgaaataatcaaacgtgagtttaagggggttagactcaattttacaaccaaacctacatgtttggttacctatttttt 220  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||| | ||||||||||||||||| ||| |||||||||||||||||||||||||    
T  4650709 agtctatgtttggtttggcgtttgaaatcatcaaacgtgagtttaaggggct-agactcaattttacaactaaatctacatgtttggttacctatttttt 4650611  T
Q  221 gatgtgattttttactccaaactt-gcgtttcattatattgaagcaggtaatagtagcttttgcaaatcgattctgtg 297  Q
    |||||||| ||||||||||||||| |||||||     |||||||||||||||| ||||||||||||||||||| ||||    
T  4650610 gatgtgat-ttttactccaaacttggcgtttc-----attgaagcaggtaatattagcttttgcaaatcgattttgtg 4650539  T

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