View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4967_low_1 (Length: 436)
Name: NF4967_low_1
Description: NF4967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4967_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 45323703 - 45323294
Alignment:
| Q |
18 |
aattttccgaggtatttggcgaataaggcgccggataaagctgagccgaggtataaagcattggctgttgattttattatggaggttgttagggttatgg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45323703 |
aattttccgaggtatttggcgaataaggcgccggataaagctgagccgagggataaagcattggctgttgattttattatggaggttgttagggttatgg |
45323604 |
T |
|
| Q |
118 |
atttgggggattagattgagtttgtgaagtatgctgtgaagatgagtttagggaaagtgaatttaaggcttttggcagttgatctaattttgaatacgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45323603 |
atttgggggattagattgagtttgtgaagtatgctgtgaagatgagtttagggaaagtgaatttaaggcttttggcagttgatctaattttgaatatgtt |
45323504 |
T |
|
| Q |
218 |
gacttcgttgaaggatcctttaggggtcaattctatggatgaagaagaagaagggaatgtggtgttattaggtgttggtgaagcgttgttctgatgttag |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45323503 |
gacttcgttgaaggatcctttaggggtcaattctatggatgaagaagaagaagggaatgtggtgttattaggtgttggtgaagcgttgttctgattttag |
45323404 |
T |
|
| Q |
318 |
tgctatgattagagcgaaggctttgccgagtttggcgcaggttcttaggtttttatcaggtaatgataaggctagtgtggttttgaaagagtttttgggt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45323403 |
tgctatgattagagcgaaggctttgccgagtttggcgcaggttcttaggtttttatcaggtaatgataaggctagtgtggttttgaaagagtttttgggc |
45323304 |
T |
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| Q |
418 |
tttgatgatg |
427 |
Q |
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|||||||||| |
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| T |
45323303 |
tttgatgatg |
45323294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 14239581 - 14239167
Alignment:
| Q |
18 |
aattttccgaggtatttggcgaataaggcgccggataaagctgagccgaggtataaagcattggctgttgattttattatggaggttgttagggttatgg |
117 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||| |||||| || ||||| || |||||||| |||||||||||||||||||||| |
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| T |
14239581 |
aattttccgagatatttggcgaataaggcgccggataaagctgatccgagg------gcgttggcggtggattttataatggaggttgttagggttatgg |
14239488 |
T |
|
| Q |
118 |
atttgggggattagattgagtttgtgaagtatgctgtgaagatgagtttagggaaagtgaatttaaggcttttggcagttgatctaattttgaatacgtt |
217 |
Q |
| |
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|||||||| ||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||| |||||||| ||||||||| | |
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| T |
14239487 |
cagtgggggatcagattgagtttgtgaagtatgttgtgaagatgagtcaagggaaaaccaatttaaggcttttggcggttgatcttattttgaatcttgt |
14239388 |
T |
|
| Q |
218 |
gacttcgttgaaggatcctttaggggtcaattctatggatgaagaagaa--gaa---------gggaatgtggtgttattaggtgttggtgaagcgttgt |
306 |
Q |
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||| | ||||||||||||||||||||| ||||| | |||||| |||||| ||| ||| || ||||||| ||| ||||||||||||||| |
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| T |
14239387 |
gacgttgttgaaggatcctttaggggtgaattcgacggatgaggaagaagggaatgtggcgtgggggatttggtgtttggaggcattggtgaagcgttgt |
14239288 |
T |
|
| Q |
307 |
tctgatgttagtgctatgattagagcgaaggctttgccgagtttggcgcaggttcttaggtttttatcaggtaatgataaggctagtgtggttttgaaag |
406 |
Q |
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|| ||||||||||||| |||| | | | || || ||| | ||||||||||| || ||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
14239287 |
tcggatgttagtgctacgattcgcgggcgagcgatgtcgactctggcgcaggttgttgggtttttatcaggtagtgaaaaggctagtgtggttttgaaag |
14239188 |
T |
|
| Q |
407 |
agtttttgggttttgatgatg |
427 |
Q |
| |
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||||| ||||||||| ||||| |
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|
| T |
14239187 |
agtttatgggttttggtgatg |
14239167 |
T |
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