View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4968-Insertion-2 (Length: 719)

Name: NF4968-Insertion-2
Description: NF4968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4968-Insertion-2
NF4968-Insertion-2
[»] chr8 (16 HSPs)
chr8 (168-626)||(16074177-16074632)
chr8 (168-482)||(16062782-16063088)
chr8 (422-626)||(16074671-16074876)
chr8 (10-170)||(16073985-16074146)
chr8 (8-170)||(16062588-16062751)
chr8 (474-607)||(16063726-16063859)
chr8 (628-719)||(16062550-16062641)
chr8 (628-719)||(16073945-16074036)
chr8 (28-165)||(16068818-16068953)
chr8 (8-165)||(16095043-16095199)
chr8 (396-485)||(16095502-16095591)
chr8 (418-474)||(16063896-16063952)
chr8 (628-715)||(16068761-16068847)
chr8 (413-478)||(16060392-16060457)
chr8 (474-539)||(16095441-16095506)
chr8 (13-96)||(16060735-16060819)


Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 168 - 626
Target Start/End: Original strand, 16074177 - 16074632
Alignment:
Q  168 aaatgtgcacaaa-gtatacaccattacgaattgctagtctagctattacactgccttcccttctatatgatatgtgtttgacattgttggccctccgta 266  Q
    ||||| ||||||| ||||||| ||||||||||||||||||||     |||||||||||||||| ||||||||||  | |||||||||||| |||||||||    
T  16074177 aaatgcgcacaaatgtatacagcattacgaattgctagtctaa----tacactgccttcccttgtatatgatatacgcttgacattgttgaccctccgta 16074272  T
Q  267 ccatccttagtatctggttctacaaatattttaatatccattttttctaaatattaggtattgttccat-gctgaacaatatctcagatggaacaacaac 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||    
T  16074273 ccatccttagtatctggttctacaaatattttaatatccatttttcctaaatattaggtattgttccattgctgaacaatatctcagatggaacaataac 16074372  T
Q  366 aataacaattgaaatggaaattaaaatttcaaaattataggtatgattattgttccattgctgaaaaatatctcagatggaacaagatctcatatggaat 465  Q
    ||||| || |||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16074373 aataataaatgaaatgggaattaaaattttgaaattataggtatgattattgttccattgctgaaaaatatctcagatggaacaagatctcatatggaat 16074472  T
Q  466 acaatattttattttaatatcaatttcatgaatggaacaataacaagtcgtttaattaaaatggatattaaaatattcgcataacatgatagtatagatg 565  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  16074473 acaatattttattttaatatcaatttcatgaatggaacaataacaagtcgtttcattaaaatggatattaaaatattcgcagaacatgatagtatagatg 16074572  T
Q  566 atattgagggttgatcatgtcaagcgtatattgaagcgaaaggtacaaaagtgtatgagac 626  Q
    ||||||||||| ||  ||||||||||||||||||||| ||||| || ||||||||||||||    
T  16074573 atattgagggtcgacaatgtcaagcgtatattgaagc-aaagggacgaaagtgtatgagac 16074632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 168 - 482
Target Start/End: Original strand, 16062782 - 16063088
Alignment:
Q  168 aaatgtgcacaaa-gtatacaccattacgaattgctagtctagctattacactgccttcccttctatatgatatgtgtttgacattgttggccctccgta 266  Q
    ||||| ||||||| ||||||| ||||||||||||||||||||     |||||||||||||||| ||||||||||  | |||||||||||| ||||||| |    
T  16062782 aaatgcgcacaaatgtatacagcattacgaattgctagtctaa----tacactgccttcccttgtatatgatatacgcttgacattgttgaccctccgaa 16062877  T
Q  267 ccatccttagtatctggttctacaaatattttaatatccattttttctaaatattaggtattgttcca-tgctgaacaatatctcagatggaacaacaac 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||      |||    
T  16062878 ccatccttagtatctggttctacaaatattttaatatccattttttctaaatattaggcattgttccattgctgaacaatatctcagatgg------aac 16062971  T
Q  366 aataacaattgaaatggaaattaaaatttcaaaattataggtatgattattgttccattgctgaaaaatatctcagatggaacaagatctcatatggaat 465  Q
    |||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16062972 aataacaattgatatggacattaaaatttcgaagttataggtatgattattgttccattgctgaaaaatatctcagatggaacaagatctcatatggaat 16063071  T
Q  466 acaatattttattttaa 482  Q
    |||||||||||||||||    
T  16063072 acaatattttattttaa 16063088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 422 - 626
Target Start/End: Original strand, 16074671 - 16074876
Alignment:
Q  422 attgctgaaaaatatctcagatggaacaagatctcatatggaatacaatattttattttaatatcaatttcatgaatggaac-----aataacaagtcgt 516  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     |||||||||||||    
T  16074671 attgctgaaaaatatctctgatggaacaagatctcatattgaatacaatattttattttaatatcaatttcatgaatggaacaaattaataacaagtcgt 16074770  T
Q  517 ttaattaaaatggatattaaaatattcgcataacatgatagtatagatgatattgagggttgatcatgtcaagcgtatattgaagcgaaaggtacaaaag 616  Q
    || |||||    ||||||||||||| |||| ||||||||||||||||||||||| ||||| ||  ||||||||||||||||||||||||||  |||||||    
T  16074771 ttcattaa----gatattaaaatatccgcagaacatgatagtatagatgatattcagggtcgacaatgtcaagcgtatattgaagcgaaagagacaaaag 16074866  T
Q  617 tgtatgagac 626  Q
    ||||||||||    
T  16074867 tgtatgagac 16074876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 16073985 - 16074146
Alignment:
Q  10 aattttcttcaactttcctattgaatgtatgaaattttaatttgagctcttgttcatgtcagcgttgcacaaatgtttcttgcaaaagaaaaa-ctataa 108  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||    
T  16073985 aattttcttcagctttcctattgaatgtatgaaattttaatttgagctcttgttcatgtcagcgttgcacaaatgtttcctgcaaaagaaaaagctagaa 16074084  T
Q  109 gggaatgatgcctgcatgcatttagaactaacaacaattgtacctccacaaattgtactaaa 170  Q
    ||||||||||| ||||||| |||||||||||||||| |||||| ||||||||||||||||||    
T  16074085 gggaatgatgcttgcatgcgtttagaactaacaacagttgtacttccacaaattgtactaaa 16074146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 16062588 - 16062751
Alignment:
Q  8 gcaattttcttcaactttcctattgaatgtatgaaattttaatttgagctcttgttcatgtcagcgttgcacaaatgtttcttgcaaaagaaaaa-ctat 106  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||     
T  16062588 gcaattttcttcagctttcctattgaatgtatgaaattttaatttgaactcttgttcatgtcagcgttgcacaaatgtttcatgcaaaagaaaaagctag 16062687  T
Q  107 aagggaatgatgcctgcatgcatttagaactaacaacaattgtacctccacaaattgtactaaa 170  Q
    ||||||||||||| ||||||| |||||||||||||||| |||||| ||||||||||||||||||    
T  16062688 aagggaatgatgcttgcatgcgtttagaactaacaacagttgtacttccacaaattgtactaaa 16062751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 474 - 607
Target Start/End: Original strand, 16063726 - 16063859
Alignment:
Q  474 ttattttaatatcaatttcatgaatggaacaataacaagtcgtttaattaaaatggatattaaaatattcgcataacatgatagtatagatgatattgag 573  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  16063726 ttattttaatatcaatttcatgaatggaacaataacaagtcgtttcattaaaatggatattaaaatattcgcagaacatgatagtatagatgattttgag 16063825  T
Q  574 ggttgatcatgtcaagcgtatattgaagcgaaag 607  Q
    ||| ||  | ||||||||||||||||||||||||    
T  16063826 ggtcgacaacgtcaagcgtatattgaagcgaaag 16063859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 628 - 719
Target Start/End: Original strand, 16062550 - 16062641
Alignment:
Q  628 aatacctaatcattgcaaaattggctcttcgaaccactgcaattttcttcagctttcctattgaatgtatgaaattttaatttgagctcttg 719  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16062550 aatacctaatcattgcaaatttggctcttcgaaccattgcaattttcttcagctttcctattgaatgtatgaaattttaatttgaactcttg 16062641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 628 - 719
Target Start/End: Original strand, 16073945 - 16074036
Alignment:
Q  628 aatacctaatcattgcaaaattggctcttcgaaccactgcaattttcttcagctttcctattgaatgtatgaaattttaatttgagctcttg 719  Q
    |||||||||||||| |||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16073945 aatacctaatcattacaaatttggctcttcgaaccattgtaattttcttcagctttcctattgaatgtatgaaattttaatttgagctcttg 16074036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 16068818 - 16068953
Alignment:
Q  28 tattgaatgtatgaaattttaatttgagctcttgttcatgtcagcgttgcacaaatgtttcttgcaaaagaaaaa-ctataagggaatgatgcctgcatg 126  Q
    ||||||||||| ||| |||||||||||||| |||||||||| |||||||||||| |||||||||| || |||||| ||| ||||||||||||| | ||||    
T  16068818 tattgaatgtacgaatttttaatttgagctattgttcatgttagcgttgcacaattgtttcttgccaatgaaaaagctagaagggaatgatgcttacatg 16068917  T
Q  127 catttagaactaacaacaattgtacctccacaaattgta 165  Q
    |||||| ||||   |||| ||||||||||||||||||||    
T  16068918 catttataact---aacagttgtacctccacaaattgta 16068953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 16095043 - 16095199
Alignment:
Q  8 gcaattttcttcaactttcctattgaatgtatgaaattttaatttgagctcttgttcatgtcagcgttgcacaaatgtttcttgcaaaagaaaaa-ctat 106  Q
    |||| ||| |||||||||| | |||||||||  |||||| ||||||| |||| |||||| | | ||||||||||||||||||| ||||| ||||| |||     
T  16095043 gcaactttattcaactttcgttttgaatgtacaaaattt-aatttgaactct-gttcatatgaacgttgcacaaatgtttcttacaaaaaaaaaaactag 16095140  T
Q  107 aagggaatgatgcctgcatgcatttagaactaacaacaattgtacctccacaaattgta 165  Q
    |||||||| |||| | |||||||| | ||  ||||||||||||||||||||||||||||    
T  16095141 aagggaataatgcttacatgcattaaaaatcaacaacaattgtacctccacaaattgta 16095199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 396 - 485
Target Start/End: Original strand, 16095502 - 16095591
Alignment:
Q  396 aaaattataggtatgattattgttccattgctgaaaaatatctcagatggaacaagatctcatatggaatacaatattttattttaatat 485  Q
    |||||| ||||| | | ||||||||||||| |||| ||||||||||||||||||||||| |||||| |||| ||||||||||||||||||    
T  16095502 aaaattttaggtcttaatattgttccattgttgaacaatatctcagatggaacaagatcccatatgaaatataatattttattttaatat 16095591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 418 - 474
Target Start/End: Original strand, 16063896 - 16063952
Alignment:
Q  418 ttccattgctgaaaaatatctcagatggaacaagatctcatatggaatacaatattt 474  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  16063896 ttccattgatgaaaaatatctcagatggaacaagatctcatattgaatacaatattt 16063952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 628 - 715
Target Start/End: Original strand, 16068761 - 16068847
Alignment:
Q  628 aatacctaatcattgcaaaattggctcttcgaaccactgcaattttcttcagctttcctattgaatgtatgaaattttaatttgagct 715  Q
    ||||||||||||||||||| ||| |||| ||||||||||||| |||| ||||||||  ||||||||||| ||| ||||||||||||||    
T  16068761 aatacctaatcattgcaaatttgcctct-cgaaccactgcaactttcctcagcttttgtattgaatgtacgaatttttaatttgagct 16068847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 413 - 478
Target Start/End: Original strand, 16060392 - 16060457
Alignment:
Q  413 tattgttccattgctgaaaaatatctcagatggaacaagatctcatatggaatacaatattttatt 478  Q
    ||||||||||||||| || |||  |||| ||||||||| |||||| |||||||| |||||||||||    
T  16060392 tattgttccattgctcaagaatgactcatatggaacaatatctcaaatggaataaaatattttatt 16060457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 539
Target Start/End: Original strand, 16095441 - 16095506
Alignment:
Q  474 ttattttaatatcaatttcatgaatggaacaataacaagtcgtttaattaaaatggatattaaaat 539  Q
    ||||||||||||| |||||||||| ||  |||||||||||| ||| ||| |||| |||||||||||    
T  16095441 ttattttaatatccatttcatgaaaggttcaataacaagtcctttcattcaaattgatattaaaat 16095506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 16060819 - 16060735
Alignment:
Q  13 tttcttcaactttcctattgaatgtatgaaatttt-aatttgagctcttgttcatgtcagcgttgcacaaatgtttcttgcaaaa 96  Q
    |||||||| ||||||  || |||||| |||| ||| ||||||||| ||||||  ||| ||||||||||| |||||||||||||||    
T  16060819 tttcttcagctttccatttcaatgtacgaaagtttgaatttgagcacttgtttgtgttagcgttgcacagatgtttcttgcaaaa 16060735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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