View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4968-Insertion-3 (Length: 626)
Name: NF4968-Insertion-3
Description: NF4968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4968-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 15 - 290
Target Start/End: Original strand, 33817346 - 33817621
Alignment:
| Q |
15 |
ctatttgtatgagaacaccagtttgtttcgaatattttgtgccttatagttggagttttgttaaccttgattgatgatcgttgggttcataatactagtg |
114 |
Q |
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| T |
33817346 |
ctatttgtatgggaacaccagtttgtttcgaatattttgtgccttatagttggagttttgttaaccttgattgatgatcgttgggttcataatactagtg |
33817445 |
T |
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| Q |
115 |
gtatttactcgaataacttgacttattggactttctcggcaaatctacctttctcgatggatcaactccaaatcatttctaaggtttggaagagtgttaa |
214 |
Q |
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| T |
33817446 |
gtatttactcgaataacttgacttattggactctctcggcaaatctatctttctcgatggatcaactccaaatcatttctaaggtttggaagagtgttaa |
33817545 |
T |
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| Q |
215 |
tccggaaaaagatatcgcattttcttggaaactgctcctcgacaaggtcccgactcatcaaagtcttatgttgtcc |
290 |
Q |
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| T |
33817546 |
tccggaaaaagttatcgcattttcttgaaaactgctcctcgacaaggccccgactcatcaaagtcttatgttgtcc |
33817621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 309 - 626
Target Start/End: Original strand, 33817608 - 33817922
Alignment:
| Q |
309 |
gtcttatgttgtccatcttgtaatgagtttgagactttgaatactcccctgtacnnnnnnnaaacgcatatctgctttgcatttaaaaatatacatatta |
408 |
Q |
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| T |
33817608 |
gtcttatgttgtccatcttgtaatgcgtttgagactt-gaatactcct-tgtactttttttaaacgcatatctgctttgcatttaaaaatatacatatta |
33817705 |
T |
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| Q |
409 |
accctgaaccactaagtgcaacaatgaaacataaatgtcatggattgcaagtagtaatccaactaatcatgtatcatttcataaggtcagaaaatattat |
508 |
Q |
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| T |
33817706 |
accctgaaccactaagtgcaacaattaa-cataaatgtcatggattgcaagtagaaatccaactaatcatgtatcatttcataaggtcagaaaatattat |
33817804 |
T |
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| Q |
509 |
ttcgcaaaacttgatttaaaaaattattttgtaatcatgacaagttttcttcattggttgcttaattagagagtgaaatacaagtagtacattacctcaa |
608 |
Q |
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| T |
33817805 |
ttcgcaaaacttgatttaaaaaattattttgtaatcatgacaagttttcttcattggttgtttaattagagagtgaaatacaagtagtagattacctcaa |
33817904 |
T |
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| Q |
609 |
ctatacaaaagagtattg |
626 |
Q |
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| T |
33817905 |
ctatacaaaagagtattg |
33817922 |
T |
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