View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4968_high_11 (Length: 317)
Name: NF4968_high_11
Description: NF4968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4968_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 29936133 - 29935816
Alignment:
| Q |
1 |
aagtccacaaaagccttagtggcaacgttgactgaacatattcaaattccaactttgtggcaactaatcaacaaccacagatgcaaattcaattcaataa |
100 |
Q |
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| T |
29936133 |
aagtccacaaaagccttagtggcaacgctgactgaacatattcaa-ttccaactttgtggcaactaatcaacaaccactgatgcaaattcaattcaataa |
29936035 |
T |
|
| Q |
101 |
tttaacatctaaagtaacaaaaccacatgaaaccttcctcgacctttcttcttg--------------------caaatacaaagttgaatacgaaaact |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29936034 |
tttaacatctaaagtaacaaaaccacatgaaaccttccacgacctttcttcttggagttaccttgtccttgtggcaaatacaaagttgaatacgaaaact |
29935935 |
T |
|
| Q |
181 |
atatgttaaattattaatacacactcctaaatttgttccttgtataaatataagtcttcaattcgttttcatcgaaatagtcataaaacatttacattca |
280 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29935934 |
atatgttaaattattaatacacactcctaaatttgttgcttgtataaatataagtcttcaattcgttttcatcgaaatagtcataaaacatttacattca |
29935835 |
T |
|
| Q |
281 |
acatgagaaacattttatt |
299 |
Q |
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||||||||||||||||||| |
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| T |
29935834 |
acatgagaaacattttatt |
29935816 |
T |
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