View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4968_high_14 (Length: 294)

Name: NF4968_high_14
Description: NF4968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4968_high_14
NF4968_high_14
[»] chr6 (11 HSPs)
chr6 (15-278)||(18979005-18979268)
chr6 (58-278)||(18990399-18990620)
chr6 (27-278)||(20083313-20083564)
chr6 (36-276)||(22209617-22209857)
chr6 (36-278)||(18994968-18995210)
chr6 (58-278)||(20235314-20235535)
chr6 (58-278)||(22129298-22129519)
chr6 (58-274)||(22085465-22085682)
chr6 (58-274)||(22001406-22001623)
chr6 (58-274)||(21967136-21967353)
chr6 (58-274)||(21967582-21967799)
[»] scaffold0264 (1 HSPs)
scaffold0264 (36-278)||(14803-15045)
[»] scaffold0074 (1 HSPs)
scaffold0074 (36-278)||(50249-50491)
[»] scaffold0007 (1 HSPs)
scaffold0007 (60-278)||(7783-8002)


Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 18979005 - 18979268
Alignment:
Q  15 ggcagattgagtagaacttttgaatatgttcaaccatgcaataaaaaacgcaggttcttgcggagttggtaattcaactgcataactgctaagataagaa 114  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18979005 ggcagattgagtagaacttttgaatatgttctaccatgcaataaaaaacgcaggttcttgcggagttggtaattcaactgcataactgctaagataagaa 18979104  T
Q  115 ggaactgtcacaatcgaaggtctacatccgggtcatttcgaacacataatcgaccaatctaaatgcacttaatgacttcatttgtagaatgatattcttt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18979105 ggaactgtcacaatcgaaggtctacatccgggtcatttcgaacacataatcgaccaatctaaatgcacttaatgacttcatttgtagaatgatattcttt 18979204  T
Q  215 aatatttggatccagtatacttaaaggtgtttcctccatccaccgtctccatacctgaaataat 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18979205 aatatttggatccagtatacttaaaggtgtttcctccatccaccgtctccatacctgaaataat 18979268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 58 - 278
Target Start/End: Original strand, 18990399 - 18990620
Alignment:
Q  58 aaaaacgcaggttcttgcggagttggtaattcaactgcataactgctaagataagaaggaactgtcacaatcgaaggtcta-catccgggtcatttcgaa 156  Q
    ||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||| |||||||||||||| |||    
T  18990399 aaaaacgcaggttctggtggagttggtaattcaactgcataaatgctaagataagaagcaactgtcacgatcgaaggtctagcatccgggtcattttgaa 18990498  T
Q  157 cacataatcgaccaatctaaatgcacttaatgacttcatttgtagaatgatattctttaatatttggatccagtatacttaaaggtgtttcctccatcca 256  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18990499 cacataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttcttcaatatttggatccagtatacttaaaggtgtttcctccatcca 18990598  T
Q  257 ccgtctccatacctgaaataat 278  Q
    ||||||||||||||||||||||    
T  18990599 ccgtctccatacctgaaataat 18990620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 27 - 278
Target Start/End: Original strand, 20083313 - 20083564
Alignment:
Q  27 agaacttttgaatatgttcaaccatgcaataaaaaacgcaggttcttgcggagttggtaattcaactgcataactgctaagataagaaggaactgtcaca 126  Q
    ||||| |||||||| |||| ||||||||| ||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||     
T  20083313 agaacatttgaataagttctaccatgcaagaaaaa-cgcaggttctggtggagttggtaattcaactgcataactgctaagataagaagcaactgtcacg 20083411  T
Q  127 atcgaaggtcta-catccgggtcatttcgaacacataatcgaccaatctaaatgcacttaatgacttcatttgtagaatgatattctttaatatttggat 225  Q
    |||||||||||  |||||||||||| | ||||||||||| ||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||    
T  20083412 atcgaaggtctggcatccgggtcatgttgaacacataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttctttaatatttggat 20083511  T
Q  226 ccagtatacttaaaggtgtttcctccatccaccgtctccatacctgaaataat 278  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  20083512 ccagtatacttaaaggtgtttgctccatccacagtctccatacctgaaataat 20083564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 36 - 276
Target Start/End: Complemental strand, 22209857 - 22209617
Alignment:
Q  36 gaatatgttcaaccatgcaataaaaaacgcaggttcttgcggagttggtaattcaactgcataactgctaagataagaaggaactgtcacaatcgaaggt 135  Q
    ||||| |||| ||||||||| ||||| |||||||||||  |||||||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||||    
T  22209857 gaataagttctaccatgcaagaaaaa-cgcaggttcttttggagttggtaattcaattgcataactgctaagataagaagcaactgtcgcaattgaaggt 22209759  T
Q  136 cta-catccgggtcatttcgaacacataatcgaccaatctaaatgcacttaatgacttcatttgtagaatgatattctttaatatttggatccagtatac 234  Q
    ||| |||||||||||||| ||||||||||| ||||||||| |||| ||||||| |||||||||||||||| || ||||| ||||||||| ||||  ||||    
T  22209758 ctagcatccgggtcattttgaacacataatagaccaatctgaatgtacttaattacttcatttgtagaataatcttcttgaatatttgggtccaaaatac 22209659  T
Q  235 ttaaaggtgtttcctccatccaccgtctccatacctgaaata 276  Q
    ||||||||||||  ||||||||  ||||||||||||||||||    
T  22209658 ttaaaggtgtttgatccatccattgtctccatacctgaaata 22209617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 36 - 278
Target Start/End: Original strand, 18994968 - 18995210
Alignment:
Q  36 gaatatgttcaaccatgcaataaaaaacgcaggttcttgcggagttggtaattcaactgcataactgctaagataagaaggaactgtcacaatcgaaggt 135  Q
    ||||| |||| ||||||||| ||||| |||||||||||  |||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||    
T  18994968 gaataagttctaccatgcaagaaaaa-cgcaggttcttttggagttggtaattcaattgcataactgctaagataagaagcaactgtcacaattgaaggt 18995066  T
Q  136 cta-catccgggtcatttcgaacacataatcgaccaatctaaatgcacttaatgacttcatttgtagaatgatattctttaatatttggatccagtatac 234  Q
    ||| ||| |||||||||| ||||||||||  ||||||||| |||||| |||||||||||||||| ||||| || ||||||||||||| | ||||  ||||    
T  18995067 ctagcattcgggtcattttgaacacataacagaccaatctgaatgcatttaatgacttcatttgcagaataatcttctttaatatttaggtccaaaatac 18995166  T
Q  235 ttaaaggtgtttcctccatccaccgtctccatacctgaaataat 278  Q
    ||| ||||||||  ||||||||| ||||||||||||||||||||    
T  18995167 ttataggtgtttgatccatccactgtctccatacctgaaataat 18995210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 58 - 278
Target Start/End: Original strand, 20235314 - 20235535
Alignment:
Q  58 aaaaacgcaggttcttgcggagttggtaattcaactgcataactgctaagataagaaggaactgtcacaatcgaaggtcta-catccgggtcatttcgaa 156  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||   || ||||||||| |||||||||||| | |||    
T  20235314 aaaaacgcaggttctttcggagttggtaattcaactgcataactgctaaggtaagaagaaactgtcgagattgaaggtctagcatccgggtcatgttgaa 20235413  T
Q  157 cacataatcgaccaatctaaatgcacttaatgacttcatttgtagaatgatattctttaatatttggatccagtatacttaaaggtgtttcctccatcca 256  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||| || ||||| ||||||||| ||||  ||||||||||||||||  ||||||||    
T  20235414 cacataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttcttgaatatttgggtccaaaatacttaaaggtgtttgatccatcca 20235513  T
Q  257 ccgtctccatacctgaaataat 278  Q
      ||||||||||||||| ||||    
T  20235514 ttgtctccatacctgaattaat 20235535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 58 - 278
Target Start/End: Original strand, 22129298 - 22129519
Alignment:
Q  58 aaaaacgcaggttcttgcggagttggtaattcaactgcataactgctaagataagaaggaactgtcacaatcgaaggtcta-catccgggtcatttcgaa 156  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||   || ||||||||| |||||||||||| | |||    
T  22129298 aaaaacgcaggttctttcggagttggtaattcaactgcataactgctaaggtaagaagaaactgtcgagattgaaggtctagcatccgggtcatgttgaa 22129397  T
Q  157 cacataatcgaccaatctaaatgcacttaatgacttcatttgtagaatgatattctttaatatttggatccagtatacttaaaggtgtttcctccatcca 256  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||| || ||||| ||||||||| ||||  ||||||||||||||||  ||||||||    
T  22129398 cacataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttcttgaatatttgggtccaaaatacttaaaggtgtttgatccatcca 22129497  T
Q  257 ccgtctccatacctgaaataat 278  Q
      ||||||||||||||| ||||    
T  22129498 ttgtctccatacctgaattaat 22129519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 58 - 274
Target Start/End: Original strand, 22085465 - 22085682
Alignment:
Q  58 aaaaacgcaggttcttgcggagttggtaattcaactgcataactgctaagataagaaggaactgtcacaatcgaaggtcta-catccgggtcatttcgaa 156  Q
    ||||| ||||||| ||| ||||||||||| |||| || || ||||||||||||||||| || |||||  || ||||||||| | || ||||||||| |||    
T  22085465 aaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtcaagattgaaggtctagcctctgggtcattttgaa 22085564  T
Q  157 cacataatcgaccaatctaaatgcacttaatgacttcatttgtagaatgatattctttaatatttggatccagtatacttaaaggtgtttcctccatcca 256  Q
    |||||||| ||||||||| ||||||||||||||||||| || |||||| || | ||||||||||||| |||| |||| ||||||||||||  ||||||||    
T  22085565 cacataatagaccaatctgaatgcacttaatgacttcagttttagaataatctcctttaatatttgggtccaatatatttaaaggtgttttatccatcca 22085664  T
Q  257 ccgtctccatacctgaaa 274  Q
    | ||||||||||||||||    
T  22085665 ctgtctccatacctgaaa 22085682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 58 - 274
Target Start/End: Original strand, 22001406 - 22001623
Alignment:
Q  58 aaaaacgcaggttcttgcggagttggtaattcaactgcataactgctaagataagaaggaactgtcacaatcgaaggtcta-catccgggtcatttcgaa 156  Q
    ||||| ||||||| ||| |||||| |||| |||| || || ||||||||||||||||| || |||||  || ||||||||| | || ||||||||| |||    
T  22001406 aaaaatgcaggttgttgtggagttcgtaactcaattgaatgactgctaagataagaagcaattgtcaagattgaaggtctagcctctgggtcattttgaa 22001505  T
Q  157 cacataatcgaccaatctaaatgcacttaatgacttcatttgtagaatgatattctttaatatttggatccagtatacttaaaggtgtttcctccatcca 256  Q
    |||||||| ||||||||| ||||||||||||||||||| || |||||| || | ||||||||||||| |||| |||| ||||||||||||  ||||||||    
T  22001506 cacataatagaccaatctgaatgcacttaatgacttcagttttagaataatctcctttaatatttgggtccaatatatttaaaggtgttttatccatcca 22001605  T
Q  257 ccgtctccatacctgaaa 274  Q
    | ||||||||||||||||    
T  22001606 ctgtctccatacctgaaa 22001623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 58 - 274
Target Start/End: Original strand, 21967136 - 21967353
Alignment:
Q  58 aaaaacgcaggttcttgcggagttggtaattcaactgcataactgctaagataagaaggaactgtcacaatcgaaggtcta-catccgggtcatttcgaa 156  Q
    ||||| ||||||| ||| ||||||||||| |||| || || ||||||||||||||||| || |||||  || ||||||||| | || || |||||| |||    
T  21967136 aaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtcaagattgaaggtctagcctctggatcattttgaa 21967235  T
Q  157 cacataatcgaccaatctaaatgcacttaatgacttcatttgtagaatgatattctttaatatttggatccagtatacttaaaggtgtttcctccatcca 256  Q
    |||||||| ||||||||| ||||||||||||||||||| || |||||  || | ||||||||||||| |||| |||| ||||||||||||  ||||||||    
T  21967236 cacataatagaccaatctgaatgcacttaatgacttcagttttagaaaaatctcctttaatatttgggtccaatatatttaaaggtgttttatccatcca 21967335  T
Q  257 ccgtctccatacctgaaa 274  Q
    | ||||||| ||||||||    
T  21967336 ctgtctccacacctgaaa 21967353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 58 - 274
Target Start/End: Original strand, 21967582 - 21967799
Alignment:
Q  58 aaaaacgcaggttcttgcggagttggtaattcaactgcataactgctaagataagaaggaactgtcacaatcgaaggtcta-catccgggtcatttcgaa 156  Q
    ||||| ||||||| ||| ||||||||||| |||| || || ||||||||||||||||| || |||||  || ||||||||| | || || |||||| |||    
T  21967582 aaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtcaagattgaaggtctagcctctggatcattttgaa 21967681  T
Q  157 cacataatcgaccaatctaaatgcacttaatgacttcatttgtagaatgatattctttaatatttggatccagtatacttaaaggtgtttcctccatcca 256  Q
    |||||||| ||||||||| ||||||||||||||||||| || |||||  || | ||||||||||||| |||| |||| ||||||||||||  ||||||||    
T  21967682 cacataatagaccaatctgaatgcacttaatgacttcagttttagaaaaatctcctttaatatttgggtccaatatatttaaaggtgttttatccatcca 21967781  T
Q  257 ccgtctccatacctgaaa 274  Q
    | ||||||| ||||||||    
T  21967782 ctgtctccacacctgaaa 21967799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 36 - 278
Target Start/End: Original strand, 14803 - 15045
Alignment:
Q  36 gaatatgttcaaccatgcaataaaaaacgcaggttcttgcggagttggtaattcaactgcataactgctaagataagaaggaactgtcacaatcgaaggt 135  Q
    ||||| |||| ||||||||| ||||| |||||||||||| ||||||||||| |||| ||||||||||||||||||||||| |||||||||||| ||||||    
T  14803 gaataagttctaccatgcaagaaaaa-cgcaggttcttgtggagttggtaaatcaattgcataactgctaagataagaagcaactgtcacaattgaaggt 14901  T
Q  136 cta-catccgggtcatttcgaacacataatcgaccaatctaaatgcacttaatgacttcatttgtagaatgatattctttaatatttggatccagtatac 234  Q
    ||| ||| |||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| |||| |||||    
T  14902 ctagcattcgggtcattttgaacacataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttctttaatatttgggtccaatatac 15001  T
Q  235 ttaaaggtgtttcctccatccaccgtctccatacctgaaataat 278  Q
    ||||||||||||  ||||||||  ||||||||||||||||||||    
T  15002 ttaaaggtgtttgatccatccattgtctccatacctgaaataat 15045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 36 - 278
Target Start/End: Complemental strand, 50491 - 50249
Alignment:
Q  36 gaatatgttcaaccatgcaataaaaaacgcaggttcttgcggagttggtaattcaactgcataactgctaagataagaaggaactgtcacaatcgaaggt 135  Q
    ||||| |||| ||||||||| ||||| |||||||||||  |||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||    
T  50491 gaataagttctaccatgcaagaaaaa-cgcaggttcttttggagttggtaattcaattgcataactgctaagataagaagcaactgtcacaattgaaggt 50393  T
Q  136 cta-catccgggtcatttcgaacacataatcgaccaatctaaatgcacttaatgacttcatttgtagaatgatattctttaatatttggatccagtatac 234  Q
    ||| ||| |||||||||| ||||||||||  ||||||||| |||||| |||||||||||||||||||||| || ||||||||||||||| ||||  ||||    
T  50392 ctagcattcgggtcattttgaacacataacagaccaatctgaatgcatttaatgacttcatttgtagaataatcttctttaatatttgggtccaaaatac 50293  T
Q  235 ttaaaggtgtttcctccatccaccgtctccatacctgaaataat 278  Q
    ||| ||||||||  ||||||||| ||||||||||||||||||||    
T  50292 ttataggtgtttgatccatccactgtctccatacctgaaataat 50249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 60 - 278
Target Start/End: Complemental strand, 8002 - 7783
Alignment:
Q  60 aaacgcaggttcttgcggagttggtaattcaactgcataactgctaagataagaaggaactgtcacaatcgaaggtcta-catccgggtcatttcgaaca 158  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| ||| |||||||||| |||||    
T  8002 aaacgcaggttcttttggagttggtaattcaattgcataactgctaagataagaagcaactgtcacaattgaaggtctagcattcgggtcattttgaaca 7903  T
Q  159 cataatcgaccaatctaaatgcacttaatgacttcatttgtagaatgatattctttaatatttggatccagtatacttaaaggtgtttcctccatccacc 258  Q
    |||||  ||||||||| |||||| |||||||||||||||||||||| || || |||||||||||| |||| |||||||||||||||||  |||||||||     
T  7902 cataacagaccaatctgaatgcatttaatgacttcatttgtagaataatcttttttaatatttgggtccaatatacttaaaggtgtttgatccatccact 7803  T
Q  259 gtctccatacctgaaataat 278  Q
    ||||||||||||||||||||    
T  7802 gtctccatacctgaaataat 7783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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