View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4968_high_16 (Length: 267)
Name: NF4968_high_16
Description: NF4968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4968_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 24370438 - 24370199
Alignment:
| Q |
18 |
agtaccagcccgcggaaaggcgacggccatttctgccctcataagaaggaagtagtttcacattccatgatcttttcccaatcagcagcatcacatttgt |
117 |
Q |
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| T |
24370438 |
agtaccagcccgcggaaaggcgacggccatttttgccctcataagaacgaagtagtttcacattccatgatcttttcccaatcagcagcatcacatttgt |
24370339 |
T |
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| Q |
118 |
gtccttgttatcaataaccccttttaaatctggtacagactgcatag--tatgatactattatcaatcatcataatttataatcgcagcataaatgaata |
215 |
Q |
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| T |
24370338 |
gtccttgttctcaataaccccttttaaatctggtacagactgcatagtatataatactattatcaatcatcataatttataatcacagcataaatgaata |
24370239 |
T |
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| Q |
216 |
tatgtagtaaaaattgtgtttgtgcatcctacccgagtat |
255 |
Q |
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| T |
24370238 |
tatgtagtaaaaattgtgtttgtgcatcctacccgagtat |
24370199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 24364109 - 24364295
Alignment:
| Q |
22 |
ccagcccgcggaaaggcgacggccatttctgccctcataagaaggaagtagtttcacattccatgatcttttcccaatcagcagcatcacatttgtgtcc |
121 |
Q |
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| T |
24364109 |
ccagccagcagaaaggcgacggttatattttccctcataacaacgaagtaatttcacattccatgatcttttcccaatcagcagcatcacatttgtgtcc |
24364208 |
T |
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| Q |
122 |
ttgttatcaataaccccttttaaatctggtacagactgcatagtatgatactattatcaatcatcataatttataatcgcagcataa |
208 |
Q |
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| T |
24364209 |
ttgttctcaataaccccttttaaatctggtacagactgcatagtataatactattatcaatcatcataacttataatcacagcataa |
24364295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 208
Target Start/End: Complemental strand, 24355976 - 24355839
Alignment:
| Q |
73 |
tttcacattccatgatcttttcccaatcagcagcatcacatttgtgtccttgttatcaataaccccttttaaatctggtacagactgcata--gtatgat |
170 |
Q |
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|||||||||||||||||||||||||||| | |||||||||| | || ||||| |||||||||||||| |||| ||||||| ||||||| |||| || |
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| T |
24355976 |
tttcacattccatgatcttttcccaatctgaagcatcacatccttctctttgttctcaataacccctttaaaatttggtacattctgcatatggtataat |
24355877 |
T |
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| Q |
171 |
actattatcaatcatcataatttataatcgcagcataa |
208 |
Q |
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| T |
24355876 |
agtattatcaatcatattaatttataatcacaacataa |
24355839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 73 - 198
Target Start/End: Complemental strand, 24359305 - 24359177
Alignment:
| Q |
73 |
tttcacattccatgatcttttcccaatcagcagcatcacatttgtgtccttgttatcaataaccccttttaaatct---ggtacagactgcatagtatga |
169 |
Q |
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|||||||||||||||| ||||||||||| |||| | ||||| | || ||||| ||||||| ||||||||||||| |||||| ||||||||| || | |
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| T |
24359305 |
tttcacattccatgattttttcccaatctgcagaagaacattcttctctttgttctcaataatcccttttaaatctaaaggtacaaactgcatagcataa |
24359206 |
T |
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| Q |
170 |
tactattatcaatcatcataatttataat |
198 |
Q |
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||||||||||||||| ||||| |||||| |
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| T |
24359205 |
tactattatcaatcactataatatataat |
24359177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 24346869 - 24346776
Alignment:
| Q |
73 |
tttcacattccatgatcttttcccaatcagcagcatcacatttgtgtccttgttatcaataaccccttttaaatctggtacagactgcatagta |
166 |
Q |
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| T |
24346869 |
tttcagattccatgatcttttcccaatctgcagcatcacatacttttctttgttctcaataaccccatttaaagttggtacacactgcatagta |
24346776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 164
Target Start/End: Complemental strand, 24362821 - 24362730
Alignment:
| Q |
73 |
tttcacattccatgatcttttcccaatcagcagcatcacatttgtgtccttgttatcaataaccccttttaaatctggtacagactgcatag |
164 |
Q |
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|||||||||||||||||||||||||||| |||| | ||||| | || ||||| ||||||||||||| ||||| ||||||| ||||||||| |
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| T |
24362821 |
tttcacattccatgatcttttcccaatctgcagaaccacatacttctctttgttctcaataaccccttctaaatttggtacacactgcatag |
24362730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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