View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4968_high_17 (Length: 249)

Name: NF4968_high_17
Description: NF4968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4968_high_17
NF4968_high_17
[»] chr6 (7 HSPs)
chr6 (10-249)||(33217401-33217639)
chr6 (56-174)||(4006612-4006730)
chr6 (109-174)||(1402947-1403012)
chr6 (129-180)||(2117374-2117425)
chr6 (133-170)||(1904790-1904827)
chr6 (133-170)||(1909023-1909060)
chr6 (89-174)||(29274283-29274368)
[»] chr3 (7 HSPs)
chr3 (81-174)||(1395594-1395687)
chr3 (145-212)||(14548739-14548804)
chr3 (100-174)||(24235737-24235811)
chr3 (115-173)||(32555036-32555094)
chr3 (135-180)||(35246639-35246684)
chr3 (56-116)||(4534468-4534528)
chr3 (98-174)||(33307506-33307582)
[»] chr5 (5 HSPs)
chr5 (98-174)||(18704090-18704165)
chr5 (133-174)||(34205214-34205255)
chr5 (145-212)||(37588378-37588443)
chr5 (108-174)||(39823175-39823241)
chr5 (98-162)||(35135728-35135792)
[»] chr2 (7 HSPs)
chr2 (91-174)||(10143105-10143188)
chr2 (100-160)||(6547852-6547912)
chr2 (115-174)||(11513855-11513914)
chr2 (100-174)||(43199356-43199430)
chr2 (91-172)||(11344340-11344421)
chr2 (133-174)||(36863679-36863720)
chr2 (133-173)||(33944580-33944620)
[»] chr4 (7 HSPs)
chr4 (101-174)||(49219082-49219155)
chr4 (128-180)||(24091433-24091485)
chr4 (133-174)||(8130149-8130190)
chr4 (98-163)||(44119227-44119292)
chr4 (97-174)||(55870395-55870472)
chr4 (135-212)||(18628561-18628636)
chr4 (98-174)||(45128364-45128440)
[»] chr8 (2 HSPs)
chr8 (102-174)||(38561670-38561742)
chr8 (57-160)||(11493871-11493974)
[»] chr7 (9 HSPs)
chr7 (98-174)||(1417204-1417280)
chr7 (98-174)||(49060480-49060556)
chr7 (54-101)||(1422795-1422842)
chr7 (91-162)||(31002694-31002765)
chr7 (97-174)||(5006563-5006640)
chr7 (91-172)||(5373158-5373239)
chr7 (133-174)||(24909639-24909680)
chr7 (56-96)||(5499310-5499350)
chr7 (130-174)||(36537892-36537936)
[»] chr1 (9 HSPs)
chr1 (54-94)||(24153446-24153486)
chr1 (98-174)||(48830130-48830206)
chr1 (91-174)||(17269183-17269266)
chr1 (115-174)||(27738234-27738293)
chr1 (99-174)||(42556685-42556760)
chr1 (56-106)||(29665884-29665934)
chr1 (56-96)||(28075669-28075709)
chr1 (118-174)||(28467361-28467417)
chr1 (133-173)||(29007771-29007811)
[»] scaffold0024 (1 HSPs)
scaffold0024 (91-174)||(27509-27592)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 33217639 - 33217401
Alignment:
Q  10 atgaagacaaaattaaattataggatttgattatgaattcaatttatttggataaacagtttaattaaccacttatagcagaagtgcatatgtataattt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33217639 atgaagacaaaattaaattataggatttgattatgaattcaatttatttggataaacagtttaattaaccacttatagcagaagtgcatatgtataattt 33217540  T
Q  110 atttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcataggttattatggttgagagcttatggaataagctga 209  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33217539 atttatacaacaaaagctt-aacaaagttaaaatatttttatataagctataaattgttttcgtaggttattatggttgagagcttatggaataagctga 33217441  T
Q  210 aaagcaaattctagtacacaaacaagaggatcaataacac 249  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33217440 aaagcaaattctagtacacaaacaagaggatcaataacac 33217401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 4006612 - 4006730
Alignment:
Q  56 tttggataaacagtttaattaaccacttatagcagaagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataa 155  Q
    ||||||||| ||  |||||||| | ||||||||| |||||| |||| ||||  ||||| || |||||| | | ||| ||||||||| | |||||||||||    
T  4006612 tttggataagcaacttaattaatcccttatagcataagtgcttatgcataagatatttctataacaaatgataaaataaagtcaaattgtttttatataa 4006711  T
Q  156 gctataaattgttttcata 174  Q
    ||||||| |||||||||||    
T  4006712 gctataagttgttttcata 4006730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 1402947 - 1403012
Alignment:
Q  109 tatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    ||||| || |||||||| | ||| ||||| ||| |||||| |||||||||||||||||||||||||    
T  1402947 tatttctataacaaaagataaaataaagttaaactattttcatataagctataaattgttttcata 1403012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 2117374 - 2117425
Alignment:
Q  129 aaacaaagtcaaaatatttttatataagctataaattgttttcataggttat 180  Q
    ||||||||||||| |||||| |||||| |||||| ||||||||||| |||||    
T  2117374 aaacaaagtcaaactattttcatataatctataagttgttttcataagttat 2117425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 1904790 - 1904827
Alignment:
Q  133 aaagtcaaaatatttttatataagctataaattgtttt 170  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  1904790 aaagtcaaattatttttatataagctatagattgtttt 1904827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 1909023 - 1909060
Alignment:
Q  133 aaagtcaaaatatttttatataagctataaattgtttt 170  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  1909023 aaagtcaaattatttttatataagctatagattgtttt 1909060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 174
Target Start/End: Complemental strand, 29274368 - 29274283
Alignment:
Q  89 agaagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    |||| ||| |||||||||  ||||| || | |||||| | ||| ||||||||| | |||| |||||||||||||| ||||||||||    
T  29274368 agaaatgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctataaactgttttcata 29274283  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 174
Target Start/End: Original strand, 1395594 - 1395687
Alignment:
Q  81 cttatagcagaagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    ||||||||| ||||||||||||||||  ||||| || |||||||| | ||| ||||||||| |||||| ||||||||||| || ||||||||||    
T  1395594 cttatagcaaaagtgcatatgtataagctatttctataacaaaagataaaataaagtcaaattattttcatataagctatgaactgttttcata 1395687  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 14548804 - 14548739
Alignment:
Q  145 tttttatataagctataaattgttttcataggttattatggttgagagcttatgg-aataagctgaaaa 212  Q
    |||| ||||||||||||| ||||||||||| |||||| ||   |||||||||||| |||||||||||||    
T  14548804 ttttcatataagctataagttgttttcataagttattctg---gagagcttatggaaataagctgaaaa 14548739  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 24235811 - 24235737
Alignment:
Q  100 tgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    ||||||| |||||| || |||||||| | | | ||||||||| |||||  ||||||||||||| |||||||||||    
T  24235811 tgtataagttatttctataacaaaagataatataaagtcaaactatttgaatataagctataagttgttttcata 24235737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 32555094 - 32555036
Alignment:
Q  115 tacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcat 173  Q
    ||||||||||| | ||| ||||||||| ||||||  |||||||||||| ||||||||||    
T  32555094 tacaacaaaagataaaataaagtcaaattattttcctataagctataagttgttttcat 32555036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 35246684 - 35246639
Alignment:
Q  135 agtcaaaatatttttatataagctataaattgttttcataggttat 180  Q
    ||||||| |||||||||||||||||||| ||||||| ||| |||||    
T  35246684 agtcaaactatttttatataagctataagttgtttttataagttat 35246639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 4534528 - 4534468
Alignment:
Q  56 tttggataaacagtttaattaaccacttatagcagaagtgcatatgtataatttatttata 116  Q
    ||||||||||||  |||||||| ||||||||| | |||||| || |||||| |||||||||    
T  4534528 tttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttata 4534468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 33307582 - 33307506
Alignment:
Q  98 tatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    ||||||||| |||||| || | |||||| | |||||| | |||| |||||||||||||| |||||  ||||||||||    
T  33307582 tatgtataaattatttctagagcaaaagataaaacaatgccaaactatttttatataagttataagatgttttcata 33307506  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 18704165 - 18704090
Alignment:
Q  98 tatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    ||||||||| |||||| || |||||||| | ||| ||||||||  |||||||||||||||||||| |||||||||||    
T  18704165 tatgtataagttatttctataacaaaagat-aaataaagtcaagctatttttatataagctataagttgttttcata 18704090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 34205214 - 34205255
Alignment:
Q  133 aaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    ||||||||| |||||||||||||||||||| |||||||||||    
T  34205214 aaagtcaaattatttttatataagctataagttgttttcata 34205255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 37588443 - 37588378
Alignment:
Q  145 tttttatataagctataaattgttttcataggttattatggttgagagcttatgg-aataagctgaaaa 212  Q
    |||| ||||||||||||| ||||||||||| |||||| ||   |||||||||||| |||||||||||||    
T  37588443 ttttcatataagctataagttgttttcataagttattctg---gagagcttatggaaataagctgaaaa 37588378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 39823241 - 39823175
Alignment:
Q  108 ttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    ||||||||| |||||||| | ||| ||||||||| || ||| |||||||||| || |||||||||||    
T  39823241 ttatttatataacaaaagataaaataaagtcaaactactttcatataagctacaagttgttttcata 39823175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 35135792 - 35135728
Alignment:
Q  98 tatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataa 162  Q
    |||||||||  ||||| || |||||||| | ||| ||||||||| |||||| |||||||||||||    
T  35135792 tatgtataagatatttctataacaaaagataaaataaagtcaaactattttcatataagctataa 35135728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 10143105 - 10143188
Alignment:
Q  91 aagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    |||||| ||||||||| |||||| || |||||||| | |||  |||||||| | |||||||||||||||||| || ||||||||    
T  10143105 aagtgcttatgtataagttatttctataacaaaagataaaattaagtcaaactgtttttatataagctataagtttttttcata 10143188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 6547852 - 6547912
Alignment:
Q  100 tgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctat 160  Q
    ||||||| |||||| || | ||||||   ||||||||||||||||||||||||||||||||    
T  6547852 tgtataagttatttctatagcaaaagtcaaaacaaagtcaaaatatttttatataagctat 6547912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 11513855 - 11513914
Alignment:
Q  115 tacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    ||||||||||| | ||| ||||||||| | |||| ||||||||||||| |||||||||||    
T  11513855 tacaacaaaagataaaataaagtcaaattgttttcatataagctataagttgttttcata 11513914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 43199356 - 43199430
Alignment:
Q  100 tgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    ||||||| |||||| ||||||||||| | ||| ||||| ||| ||| ||  |||||||||||| |||||||||||    
T  43199356 tgtataagttatttctacaacaaaagataaaataaagttaaattatcttcgtataagctataagttgttttcata 43199430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 172
Target Start/End: Complemental strand, 11344421 - 11344340
Alignment:
Q  91 aagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttca 172  Q
    |||||| |||| ||||  ||||| || |||||||| | ||| ||||||||| | |||| ||| |||||||||||||||||||    
T  11344421 aagtgcttatgcataagatatttctataacaaaagataaaagaaagtcaaattgttttcatacaagctataaattgttttca 11344340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 36863720 - 36863679
Alignment:
Q  133 aaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    |||||||||  ||||||||||||| |||||||||||||||||    
T  36863720 aaagtcaaacaatttttatataagttataaattgttttcata 36863679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 33944580 - 33944620
Alignment:
Q  133 aaagtcaaaatatttttatataagctataaattgttttcat 173  Q
    ||||||||| | |||| ||||||||||||||||||||||||    
T  33944580 aaagtcaaattgttttcatataagctataaattgttttcat 33944620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 49219082 - 49219155
Alignment:
Q  101 gtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    |||||| |||||| || |||||||  | ||| ||||||||| |||||| ||||||||||||| |||||||||||    
T  49219082 gtataagttatttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttttcata 49219155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 24091433 - 24091485
Alignment:
Q  128 taaacaaagtcaaaatatttttatataagctataaattgttttcataggttat 180  Q
    |||| ||||||||| |||||| |||||||||||||| |||||||||| |||||    
T  24091433 taaataaagtcaaattattttcatataagctataaactgttttcataagttat 24091485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 8130149 - 8130190
Alignment:
Q  133 aaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    ||||||||| |||||| |||||||||||||| ||||||||||    
T  8130149 aaagtcaaattattttcatataagctataaactgttttcata 8130190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 44119292 - 44119227
Alignment:
Q  98 tatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaa 163  Q
    ||||||||| |||||| || | |||||| | |||||||||||| || |||| ||||||||||||||    
T  44119292 tatgtataagttatttctatagcaaaagataaaacaaagtcaatatgttttcatataagctataaa 44119227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 55870472 - 55870395
Alignment:
Q  97 atatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    |||||||||||  |||| || |||||||| | ||| ||||||||| | |||| | ||||||||||| |||||||||||    
T  55870472 atatgtataatccatttttataacaaaagatcaaataaagtcaaactgttttcacataagctataagttgttttcata 55870395  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 18628636 - 18628561
Alignment:
Q  135 agtcaaaatatttttatataagctataaattgttttcataggttattatggttgagagcttatgg-aataagctgaaaa 212  Q
    ||||||| | |||||||||||| |||||| |||||||||| |||||  ||   |||||||||||| |||||||||||||    
T  18628636 agtcaaactgtttttatataagttataaactgttttcataagttatcttg---gagagcttatggaaataagctgaaaa 18628561  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 45128440 - 45128364
Alignment:
Q  98 tatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    |||||||||  ||||| || |||||||| | |||  || ||||| |||| | |||||||||||||||||||||||||    
T  45128440 tatgtataaactatttctataacaaaagataaaatcaaatcaaattattctcatataagctataaattgttttcata 45128364  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 38561670 - 38561742
Alignment:
Q  102 tataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    ||||| ||||||||| |||||||| | ||| ||||||||| ||||||||| ||  |||||| |||||||||||    
T  38561670 tataagttatttatataacaaaagataaaataaagtcaaactatttttatctatactataagttgttttcata 38561742  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 160
Target Start/End: Original strand, 11493871 - 11493974
Alignment:
Q  57 ttggataaacagtttaattaaccacttatagcagaagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataag 156  Q
    |||||||||||| |||||||| ||||||||| | |||||| | |  |||| ||||||  |||||||||| | ||  ||||||||| | ||||||||| ||    
T  11493871 ttggataaacagcttaattaagcacttatagtataagtgcttgttcataagttattttcacaacaaaagataaagtaaagtcaaagtttttttatatgag 11493970  T
Q  157 ctat 160  Q
    ||||    
T  11493971 ctat 11493974  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 1417204 - 1417280
Alignment:
Q  98 tatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    |||||||||  |||||||| |||||||| | ||| ||||||||| | |||| |||||||| |||| |||||||||||    
T  1417204 tatgtataaactatttatataacaaaagataaaataaagtcaaattgttttcatataagcaataagttgttttcata 1417280  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 49060480 - 49060556
Alignment:
Q  98 tatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    |||||||||  ||||| || |||||||  | ||| ||||||||| |||||||||||||||||||| || ||||||||    
T  49060480 tatgtataagctatttctataacaaaaaataaaataaagtcaaattatttttatataagctataagttattttcata 49060556  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 1422795 - 1422842
Alignment:
Q  54 tatttggataaacagtttaattaaccacttatagcagaagtgcatatg 101  Q
    ||||||||||||||| |||||||| || |||||||| |||||||||||    
T  1422795 tatttggataaacagcttaattaaacatttatagcataagtgcatatg 1422842  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 162
Target Start/End: Original strand, 31002694 - 31002765
Alignment:
Q  91 aagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataa 162  Q
    |||||| |||||||||  |||||  || ||||||| | ||| |||||||||||||||| |||||||||||||    
T  31002694 aagtgcttatgtataaactatttcaaccacaaaagataaaataaagtcaaaatattttcatataagctataa 31002765  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 5006640 - 5006563
Alignment:
Q  97 atatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    ||||||||||  ||||  || |||||||| | ||| ||||||||| | |||| ||||||| |||||||||||||||||    
T  5006640 atatgtataagctattcctataacaaaagataaaataaagtcaaactgttttcatataaggtataaattgttttcata 5006563  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 172
Target Start/End: Original strand, 5373158 - 5373239
Alignment:
Q  91 aagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttca 172  Q
    |||||| ||||||||   ||||| || |||||||| | ||| |||||| ||| ||||||||||||| ||||| |||||||||    
T  5373158 aagtgcttatgtatatgctatttctataacaaaagataaaataaagtccaaacatttttatataagttataagttgttttca 5373239  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 24909639 - 24909680
Alignment:
Q  133 aaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    ||||||||| |||||| ||||||||||||| |||||||||||    
T  24909639 aaagtcaaattattttcatataagctataagttgttttcata 24909680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 5499350 - 5499310
Alignment:
Q  56 tttggataaacagtttaattaaccacttatagcagaagtgc 96  Q
    |||||||||||| ||||||||||||||||| ||| ||||||    
T  5499350 tttggataaacaatttaattaaccacttatggcaaaagtgc 5499310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 36537892 - 36537936
Alignment:
Q  130 aacaaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    |||||||||||| |||||| ||||||||||| || ||||||||||    
T  36537892 aacaaagtcaaattattttcatataagctatgaagtgttttcata 36537936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 24153446 - 24153486
Alignment:
Q  54 tatttggataaacagtttaattaaccacttatagcagaagt 94  Q
    ||||||||||||||| |||||| ||||||||||||||||||    
T  24153446 tatttggataaacagcttaattgaccacttatagcagaagt 24153486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 48830206 - 48830130
Alignment:
Q  98 tatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    ||||||||| |||||| ||  || |||| | ||| ||||||||| |||||| |||||||||||||| ||||||||||    
T  48830206 tatgtataagttatttctattaccaaagataaaataaagtcaaactattttcatataagctataaactgttttcata 48830130  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 17269183 - 17269266
Alignment:
Q  91 aagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    |||||| ||||||||| |||||| || ||||||||   ||| ||||||||| | |||| |||||||| |||| |||||||||||    
T  17269183 aagtgcttatgtataagttatttctagaacaaaagtgaaaataaagtcaaattgttttcatataagcaataagttgttttcata 17269266  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 27738293 - 27738234
Alignment:
Q  115 tacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    ||||||||||| | ||| ||||||||| | |||| ||||||||||||| |||||||||||    
T  27738293 tacaacaaaagataaaataaagtcaaattgttttcatataagctataatttgttttcata 27738234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 174
Target Start/End: Complemental strand, 42556760 - 42556685
Alignment:
Q  99 atgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    |||||||| |||||| ||  ||||||| | ||| ||| ||||| || ||||||||||||||||| |||||||||||    
T  42556760 atgtataagttatttctatgacaaaagatgaaataaaatcaaactacttttatataagctataagttgttttcata 42556685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 29665934 - 29665884
Alignment:
Q  56 tttggataaacagtttaattaaccacttatagcagaagtgcatatgtataa 106  Q
    ||||||||||||| |||||||| ||||||||||| ||| || |||||||||    
T  29665934 tttggataaacagcttaattaaacacttatagcataagcgcttatgtataa 29665884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 28075669 - 28075709
Alignment:
Q  56 tttggataaacagtttaattaaccacttatagcagaagtgc 96  Q
    |||||||||||| ||||||||| ||||||||||| ||||||    
T  28075669 tttggataaacaatttaattaagcacttatagcacaagtgc 28075709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 28467417 - 28467361
Alignment:
Q  118 aacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    |||||||| | ||| ||||||||| |||||| |||||||||| || |||||||||||    
T  28467417 aacaaaagataaaataaagtcaaattattttcatataagctacaagttgttttcata 28467361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 29007811 - 29007771
Alignment:
Q  133 aaagtcaaaatatttttatataagctataaattgttttcat 173  Q
    ||||||||| |||||| ||||||||||||| ||||||||||    
T  29007811 aaagtcaaactattttcatataagctataagttgttttcat 29007771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 27509 - 27592
Alignment:
Q  91 aagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 174  Q
    |||||| ||||||||| |||||| || |||| ||| | ||| ||||||||| | |||| |||||| |||||| |||||||||||    
T  27509 aagtgcttatgtataagttatttctataacagaagataaaataaagtcaaattgttttcatataaactataagttgttttcata 27592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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